BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939294
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62430.1 | Symbols: | Protein with RNI-like/FBD-like domain... 876 0.0
AT5G15620.1 | Symbols: | F-box/RNI-like superfamily protein | ... 422 5e-117
> AT3G62430.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr3:23093795-23095304 REVERSE LENGTH=1314
Length=1314
Score = 876 bits (474), Expect = 0.0
Identities = 753/885 (85%), Gaps = 30/885 (3%)
Strand=Plus/Plus
Query 22 ATGGATAGAATCAGTAATTTGCCAGATGATATTATTTATCACGCAATCTCCTTCCTTTCG 81
|||||||||||||||||||| ||||||| | |||| |||| || |||||||| ||||||
Sbjct 1 ATGGATAGAATCAGTAATTTACCAGATGGTGTTATCTATCGCGTGATCTCCTTACTTTCG 60
Query 82 GCAAAAGAAGCTACGTGCTTGAAGTATGCCTCCAAGAAATGGCTGAATCTGGTTACCATC 141
||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 61 ACAAAAGAAGCTACTTGCTTGAAGTATACCTCCAAGAACTGGCTGAATCTGGTTACCATC 120
Query 142 ATACCGAGTGCTGTTTTTGTTGACTCCTCGTCGTCTGCCAGTAGTGGAAGTTTCCAAGAT 201
||||||| ||||||||| ||||| |||||| ||||||||| ||||| ||||||| |||||
Sbjct 121 ATACCGATTGCTGTTTTCGTTGATTCCTCGGCGTCTGCCATTAGTGCAAGTTTCAAAGAT 180
Query 202 TTCGCTGATCGAATAAAATTGGCTCCACTTACCAGTCACCGTATGAGGAGATTCTCTCTA 261
|||||||||||||||| || |||| |||| ||||||||||||| |||||||||||||||
Sbjct 181 TTCGCTGATCGAATAATGTTAGCTCGACTTGCCAGTCACCGTATTAGGAGATTCTCTCTA 240
Query 262 AAGTTGCAGTCTTTGGATTTTGCTCAGTATGAAACTGTCAACGATTGTTTACGCAAAGTG 321
||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |||
Sbjct 241 AAGTTGCAGTCTTTGAATTTTGCTCAGTATAAAACTGTCAATGATTGTTTACGCAATGTG 300
Query 322 TTGGAGTGTGGTGTCTTGGATCTTGAACTGGACATCAATGTCAAAGGAGATTACTCACTG 381
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 TTGGAGTGTGGAGTCTTGGATCTTGAACTGGACATCAATGTCAGAGGAGATTACTCACTG 360
Query 382 CCTTTTGAGATCTTCACTTGCCAGAGCGTTGTGAAACTGAAACTAGGGTCTGGTTTTGTT 441
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 361 CCTTCTGAGATCTTCACTTGCAAGAGCGTTGTGAAAATGAAACTAGGGTCTGGTTTTGTT 420
Query 442 ATTGACATTCTCCCTAAGAATGCGATG-CTTCCTGCTCTGAAGACTCTCCTTCTTGATTC 500
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |
Sbjct 421 ATTGACATTCTCCCTAAGAATGCT-TGGCTTCCTGCTCTTAAGACTCTCCTTCTTGATAC 479
Query 501 AGTTCGGTTCGAATTCGATAATACTGGTGGTTGTGCGTTTACAAGGCTTCTTTCTGCTTG 560
||||||||||||||||||||| |||| ||||||| ||||||||| |||| ||||||||||
Sbjct 480 AGTTCGGTTCGAATTCGATAACACTGCTGGTTGTTCGTTTACAAAGCTTATTTCTGCTTG 539
Query 561 CCCTGTGCTCGAGGAGTTAGTCATAGATGGATTCAACTGTGAACTTTGGAATTGGTCTCA 620
|||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 540 CCCTGTGCTCGAGGAGTTAGTCATAGATGGCCACAACTGTGAAGATTGGAAATGGTCTCG 599
Query 621 TACCGTGTATAGTCGGATCCTTAAGAGACTTACTATAAGGCGTGCATATTCAAAAGATTC 680
| || | ||||| |||||||||| |||||||||| ||||| | | || | |||
Sbjct 600 CAGAGTATCTAGTCAGATCCTTAAGCGACTTACTATTCGGCGTA-A-AG--AATGGGTTC 655
Query 681 AGATGATTGTGATGACTATGATTTTGAGAGAATTAGTTTTGATACTCCCAGTCTT-ACCT 739
| |||| | | | ||| | ||||||| || ||||| |||| ||| |||||| | |
Sbjct 656 A--TGAT-G-GCT--CTA-G-TTTTGAGCCTATCAGTTTGGATATTCCTAGTCTTGAA-T 706
Query 740 ACTTGGAATACAGGGACTA-TATTC-ATGATGAGTT-TCCAGATGTAAATCTCAACTCCC 796
|||| ||||| || || | | | | ||| || | ||||| ||| || ||||||||||
Sbjct 707 ACTTTAAATACTTTGA-TACTCTCCGA-GAT-AGCTATCCAGTTGTTAAGCTCAACTCCC 763
Query 797 TTGTTGAAGCGAAGCTCCAATTTAATA-TGTGGACTGCTTGGATGA-AC--ACCGATCTA 852
|||| ||||| ||||| || || | | | | | |||| || || || || |
Sbjct 764 TTGTGGAAGCTAAGCTAGAACTTCCTTCTCTTTA-TA-TTGGG-GATACCTACA-ATGTT 819
Query 853 ACGAATCTGTTCAAGGGGTTGAAACATGTTCAGATTCTGCGCTTA 897
| ||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 820 AGGAATCTGATCAAGGGGTTGAAAAATGTTCAGATTCTGCGCTTA 864
Score = 324 bits (175), Expect = 2e-87
Identities = 225/248 (91%), Gaps = 7/248 (3%)
Strand=Plus/Plus
Query 954 AAAA-TCTGTCTGCGAATGCTTGGAGGGGTATTCTTTCCTTTTGTCCTGCCCTGTTGAGA 1012
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1055 AAAACTCTGTTTGCGAATGCTTGGATGGGTATTCTTTCCTTTTGTCCTGCCCTATTGAGA 1114
Query 1013 TCCTAACGATAACCCAGTTCGGTGGACG-GATCGGAGAAATGGTGCAAATAAAGCATGTC 1071
|||||| |||||| ||||||||||| | ||| | |||||||| |||| || || |||||
Sbjct 1115 TCCTAAAGATAACTGAGTTCGGTGGA-GAGATTGAAGAAATGGAGCAAGTAGAGTATGTC 1173
Query 1072 TTGGAGAATTTGCTGTGTCTGGTGCTGTTGGAAGTTCATGTTGAG-GAAAGAAGAGTTGA 1130
||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||
Sbjct 1174 TTGGAGAATTTGCTGTGTCTGGTGCTGTTGGAAATTCATGTTAAGACAAAGAAGA-TTGA 1232
Query 1131 CA-ATAAGCTGCAGATCTTGGCGGATCTCCTAATGCTCCCGAGAGCTTCATCCAAATGCA 1189
|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1233 CAGA-AAGCTGCAGATCTTGGCGGATCTCCTAATGCTTCCGAGAGCTTCATCCAAATGCA 1291
Query 1190 AAGTCCAG 1197
||||||||
Sbjct 1292 AAGTCCAG 1299
> AT5G15620.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:5082465-5083991 FORWARD LENGTH=1323
Length=1323
Score = 422 bits (228), Expect = 5e-117
Identities = 628/811 (77%), Gaps = 68/811 (8%)
Strand=Plus/Plus
Query 22 ATGGATAGAATCAGTAATTTGCCAGATGATATTATTTATCAC-GCAATCTCCTTCCTTTC 80
||||||||| |||| ||||| ||||| ||| ||||||| ||| | | || || |||||
Sbjct 1 ATGGATAGATTCAGCAATTTACCAGACGATGTTATTTACCACATC-GTTTCTTTTCTTTC 59
Query 81 GGCAAAAGAAGCTACGTGCTTGAAGTATGCCTCCAAGAAATGGCTGAATCTGGTTACCAT 140
|||||| || ||||||||||| |||| || ||||||||| | | |||| ||||||| ||
Sbjct 60 GGCAAAGGAGGCTACGTGCTTAAAGTTTGTCTCCAAGAACTTTCAGAATTTGGTTACTAT 119
Query 141 CATACCGAGTGCTGTTTTTGTTGACTCCTCGTCGTCTGCCAGTAGTGG-AAGTTTCCAAG 199
|| | ||| | | ||||| | || | | || | | || |||||| ||||
Sbjct 120 CA-AACGA-AAC-G---TTGTT---T--TC--C--AT--CA-TTG-GGAAAGTTT-CAAG 159
Query 200 -ATTTCGCTGATCGAATAAAATTGGCTCCACTTACCAGTCACCGTATGAGGAGATTCTCT 258
|||| | |||| | || ||| ||| || | ||||| ||||||| | ||||||||||
Sbjct 160 AATTTTGTTGAT-GGAT--TATTAGCTGAACCTGCCAGTTACCGTATAAAGAGATTCTCT 216
Query 259 CT-AAAGTTGCAGTCTTTGGATTTTGCTCAGTATGAA-ACTGTCAACGATTGT-TTACGC 315
|| ||| ||| |||| ||||||||||||||||| || | ||||||||||||| || ||
Sbjct 217 CTGAAA-TTGGTGTCTATGGATTTTGCTCAGTAT-AATATTGTCAACGATTGTCTT-TGC 273
Query 316 AAAGTGTTGGAGTGTGGTGTCTTGGATCTTGAACTGGACATCAATGTCAAAGGAGATTAC 375
|| |||||| || | ||||||||||||||||| || ||||| || ||||||| |||||||
Sbjct 274 AATGTGTTGAAGCGAGGTGTCTTGGATCTTGAGCTCGACATTAACGTCAAAGAAGATTAC 333
Query 376 -TCACTGCCTTTTGA-GATCTTCACTTGCCAGAGC-GTTGTGAAACTGAAACTAGGGTCT 432
| ||| |||| ||| | ||||||||||| ||| | ||||| | |||||||||||||| |
Sbjct 334 AT-ACTTCCTTCTGATG-TCTTCACTTGCAAGA-CAGTTGTTAGACTGAAACTAGGGTGT 390
Query 433 GGTTTTGTTATTGACATTCTCCCTAAGAATGCGATGCTTCCTGCTCTGAAGACTCTCCTT 492
|||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||
Sbjct 391 GGTTTTGTTATTGACATTCTCCCTAAGAATGCTTTGCTTCCAGCTCTTAAGACTCTCATT 450
Query 493 CTTGATTCAGTTCGGTTCGAATTCGATAATACTGGTGGTTGTGCGTTTACAAGGCTTCTT 552
|||||||||||||||||| | || | | | |||||||||||| |||||||||||
Sbjct 451 CTTGATTCAGTTCGGTTCTA---CGCCAGT---GATGGTTGTGCGTTCACAAGGCTTCTC 504
Query 553 TCTGCTTGCCCTGTGCTCGAGGAGTTAGTCATAGATGGAT-TCAACTGTGAACTTTGGAA 611
||||||| ||||||||| || |||||||| |||||| | | ||||||| |||| ||||||
Sbjct 505 TCTGCTTCCCCTGTGCTTGAAGAGTTAGTTATAGATCG-TCTCAACTGGGAACATTGGAA 563
Query 612 TTGGT-CTCA-TACCGTGTATAGTCGGA-TCCTTAAGAGACTTACTATAAGGCGTGCATA 668
||| ||| | |||| ||||| || || |||||||||||||| | ||||| | |
Sbjct 564 A-GGTTCTCGCTTT-GTGTCTAGTCCGACTC-TTAAGAGACTTACTCTTCGGCGTAAAGA 620
Query 669 TTCAAAA---GATTCAGATGATTGTGATGACTATGATTTTGAGAGAATTAGTTTTGATAC 725
| || || | || | | || |||| ||||||||||| |||||||||||||
Sbjct 621 ATGGGAACCCGAACCTGAA-ACT-TG--GACT--GATTTTGAGAGCGTTAGTTTTGATAC 674
Query 726 TCCCAGTCTTACCTACTTGGAATACAGGGACTAT-ATTC-ATGATGAGTTTCCAGAT-GT 782
||| |||||| | ||||| |||||| || | | |||| || ||| || |||| || ||
Sbjct 675 TCCGAGTCTTGCTTACTTAAAATACAAAGA-TGTTATTCCAT-ATGGGTATCCA-ATTGT 731
Query 783 AAATCTCAACTCCCTTGTTGAAGCGAAGCTC 813
|||||||||||| |||||||||| | ||||
Sbjct 732 TAATCTCAACTCCATTGTTGAAGCTAGGCTC 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65361109590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5