BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939299
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fac... 1683 0.0
> AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22988547-22990709 REVERSE LENGTH=1805
Length=1805
Score = 1683 bits (911), Expect = 0.0
Identities = 1075/1151 (93%), Gaps = 23/1151 (2%)
Strand=Plus/Plus
Query 1 GGTTAAACGATCAAGAGTATATGGAGCTTGTGTTTGAGAATGGCCAGATTCTTGCAAAGG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GGTTAAGCGATCAAGAGTATATGGAGCTTGTGTTTGAGAATGGCCAGATTCTTGCAAAGG 254
Query 61 GCCAAAGATCCAACGTTCCTCTGCAGAATCAACGTACCAAATCGATCATGGATTTGTATG 120
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 255 GCCAAAGATCCAACGTTTCTCTGCATAATCAACGTACCAAATCGATCATGGATTTGTATG 314
Query 121 AGGCCGAGTATAACGAGGACTTCATGAAGAGTATCATCCAtggtggtggtggtggtggtg 180
|||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 315 AGGCAGAGTATAACGAGGATTTCATGAAGAGTATCATCCA------TGGTGGTGGTGGTG 368
Query 181 CCAACA-AGAATCTCGGAGACACACAGGTTGTTCCACAAAGTCATGTTGTTCCTGCTCAT 239
||| || | |||||||| ||||| ||||||||||||||||||||||||| | |||| |||
Sbjct 369 CCATCACA-AATCTCGGGGACACGCAGGTTGTTCCACAAAGTCATGTTGCTGCTGCCCAT 427
Query 240 GAAACAAACATGTTGGAAAGCAATAAACATGTTGACGATTCCACTTTGATTGAGACTTTG 299
|||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 428 GAAACAAACATGTTGGAAAGCAATAAACATGTTGACGATT---C------TGAGACTTTG 478
Query 300 AAAGCTTCTTCATCAAAGAGGATGATGGTTGATTATGATAACCGAAAGAAGATCAAGTTT 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 479 AAAGCTTCTTCATCAAAGAGGATGATGGTTGATTATCATAACCGAAAGAAGATCAAGTTT 538
Query 360 ATACCTCCTGATGAGCAATCTGTGGTTGCTAAAAGGATGGTT-GAATCGGGATTTAACAC 418
|||||||||||||||||||| ||||||||| | ||| | ||| ||| ||| ||| ||||
Sbjct 539 ATACCTCCTGATGAGCAATCCGTGGTTGCTGATAGG-TCGTTCAAATTGGGCTTTGACAC 597
Query 419 TTCCTCCGCAGGTTTCACTGAAGACAGTGAAGGATCGATGTATCTAAGCAGCAGTCTAGA 478
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 TTCCTCCGTAGGTTTCACTGAAGACAGTGAAGGATCGATGTATCTAAGCAGTAGTCTAGA 657
Query 479 TGACGAGTCAGATGATGCGAGGCCACAAGTTCCTGCAAGAACAAGAAAAGCTTTGGTCAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGACGAGTCAGATGATGCGAGGCCACAAGTTCCTGCAAGAACAAGAAAAGCTTTGGTCAA 717
Query 539 AAGAAAACGAAATGCAGAAGCTTATAATTCACCTGAAAGAAAGCAAAGAAGA-GACGTCA 597
||||||||||||||||||||| |||||||||||||| ||||| ||||||| | || |||
Sbjct 718 AAGAAAACGAAATGCAGAAGCGTATAATTCACCTGAGAGAAATCAAAGAA-ATGATATCA 776
Query 598 ACAAGAAAATGCGTACTTTGCAGGATCTACTACCTAATTCTCACGAGGATGACAACGAAT 657
|||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||
Sbjct 777 ACAAGAAAATGCGTACTTTGCAAAATCTACTACCTAACTCTCACAAGGACGACAACGAAT 836
Query 658 CAATGTTGGATGAAGCAATCAATTATATGAAAAACCTTCAACTTCAAGTTCAGATGATGA 717
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 837 CGATGTTGGATGAAGCAATCAATTATATGACAAACCTTCAACTTCAAGTTCAGATGATGA 896
Query 718 CGATGGGTAACAGATTTGTTACACCATCAATGATGTTACCTTTGGGGCCGCATTACTCTC 777
||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||
Sbjct 897 CGATGGGTAACAGATTTGTTACACCATCAATGATGATGCCTTTGGGGCCGAACTACTCTC 956
Query 778 AGATGGATCTAGCAATGGGTATGGGAATGCAAATGGGCGCACAACAGTTTCTGCCTGCAC 837
|||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 957 AGATGGGTCTAGCAATGGGTGTGGGAATGCAAATGGGCGAACAACAGTTTCTGCCTGCAC 1016
Query 838 ATGTCCTAGGAGCTGGCTTGCCTGGGATTAATGATTCAGCAGATATGCTAAGGTTTCTTA 897
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 ATGTTCTAGGAGCTGGCTTGCCTGGGATTAATGATTCAGCAGATATGCTAAGGTTTCTTA 1076
Query 898 ACCATTCTGGACTAATGCAAATGCAAAACTCTGCACCTTTCACTCCAACGGAAGATTGTT 957
||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1077 ACCATCCTGGACTAATGCCAATGCAAAACTCTGCACCTTTCATTCCAACGGAAAATTGTT 1136
Query 958 CCCCACAATCTGTCCCTCCATCGTGCGCGGCTTTCCCTAACCAAATACCAAACCCCACCT 1017
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 1137 CCCCACAATCTGTCCCTCCATCGTGCGCTGCTTTCCCTAACCAAATACCAAATCCCAACT 1196
Query 1018 CTTTGTCAAATTTAGATGGTGCATCTCCTTACACAAGAAATCAAGGAACATTAACAGATG 1077
||||||||||||||||||||||| | | |||||||||||||||||||| | |||||||||
Sbjct 1197 CTTTGTCAAATTTAGATGGTGCAAC-C-TTACACAAGAAATCAAGGAAAACTAACAGATG 1254
Query 1078 AAGGAATTCTCCCTGGTAAAAATCTGGAAACCCGTGAGCAGATGAAATAAACAGTGATGA 1137
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1255 AAGGAATTCTCCCTGGTAAAAATCTGGAAACCCGTGAGCAGATGAAGTAAACAGTGATGA 1314
Query 1138 TTGTTACCTGC 1148
|||||||||||
Sbjct 1315 TTGTTACCTGC 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5