BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939301

Length=437
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62110.1 | Symbols:  | Pectin lyase-like superfamily protein...   582    7e-166


> AT3G62110.1 | Symbols:  | Pectin lyase-like superfamily protein 
| chr3:22997031-23000041 REVERSE LENGTH=2142
Length=2142

 Score =  582 bits (315),  Expect = 7e-166
 Identities = 345/359 (96%), Gaps = 3/359 (1%)
 Strand=Plus/Plus

Query  1    ATCACAGATCTTCTTTTCATATGAAGAGATCTTTCCTTCTCTTGTATGTGCTCCTGGTAC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425  ATCACAGATCTTCTTTTCATATGAAGAGATCTTTCCTTCTCTTGTATGTGCTCCTGGTAC  484

Query  61   ATGCCTTCTATGGTGCTTGGTGTAGTAGTGTTGGAGGAAGCCTGCATTGTGAATATTCCA  120
            | ||||||||||| |||||||||||| || | |||| |||||||||||||||||||||||
Sbjct  485  AGGCCTTCTATGGGGCTTGGTGTAGT-GT-T-GGAGAAAGCCTGCATTGTGAATATTCCA  541

Query  121  GTTTAGCGAGTCTTCACCGGCCTCACAGTGTATCGATTACAGAGTTTGGAGCGGTTGGAG  180
             ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  542  ATTTAGCGAGTCTTCACCGGCCTCACAGCGTATCGATTACAGAGTTTGGAGCGGTTGGAG  601

Query  181  ATGGTGTGACTCTAAATACTAAAGCCTTTCAGAATGCTTTGTTCTACCTCAATTCTTTCT  240
            |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct  602  ATGGTGTGACTCTAAACACTAAAGCCTTTCAGAATGCTCTGTTCTACCTCAATTCTTTCT  661

Query  241  CTGACAAAGGCGGTGCCAAGCTTTTTGTTCCTGCTGGTCAGTGGCTTACCGGGAGTTTCG  300
            |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  662  CTGATAAAGGCGGGGCCAAGCTTTTTGTTCCCGCTGGTCAGTGGCTTACCGGGAGTTTCG  721

Query  301  ACCTCATCAGTCACCTCACCTTATGGCTAGATAAAGGTGCAACGATTCTCGGGTCAACG  359
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  722  ACCTTATCAGTCACCTCACCTTATGGCTAGATAAAGGTGCAACGATTCTCGGGTCAACG  780



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20760580337


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5