BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939302
Length=466
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62160.1 | Symbols: | HXXXD-type acyl-transferase family pr... 673 0.0
> AT3G62160.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:23014208-23015839 REVERSE LENGTH=1443
Length=1443
Score = 673 bits (364), Expect = 0.0
Identities = 410/433 (95%), Gaps = 0/433 (0%)
Strand=Plus/Plus
Query 1 TCAAGTAAATCTTTTCTTCAATGGCTTTTTCATTAACCAGAGTAAACCGAGTTCTTATTC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 TCAAGTCAATCTTTTCTTCAATGGCTTTTTCATTAACCAGAGTAAACCGAGTTCTTATTC 71
Query 61 AACCATGTGAACCGACTCCATCTGTAGTGTTGGATCTGTCCTTAATCGATAATATTCCTG 120
|| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 72 AAGCATGTGAAACGACCCCATCAGTAGTGTTGGATCTGTCCTTAATCGATAATATTCCGG 131
Query 121 TCCTACGATGTTTCACTAGAACTATATATGTGTTTACACATGGACCTGATGCAGCTAGAG 180
| |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 132 TTCTACGATGTTTCGCTAGAACAATACATGTGTTTACTCATGGACCTGATGCAGCTAGAG 191
Query 181 TCATACGAGAGGCATTGGCTAAAGCACTTGTCTCTTACTATCCTTTGTCTGGTAGATTGA 240
||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 192 CCATACAAGAGGCATTGGCTAAAGCACTTGTCTCTTACTATCCCTTGTCCGGTAGATTGA 251
Query 241 AAGAGTTAAACCAAGGTAAAATTCAGATCGATTGTACCGGGAAAACCGGAATTTGGTTCG 300
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 252 AAGAGTTAAACCAAGGTAAACTTCAGATCGATTGTACCGGGAAAACTGGAATTTGGTTCG 311
Query 301 TTGATGCCGTTACGGATGTTACTCTAGAGAGTGTTGGTTATTTCGACAATCTAATGGAAA 360
||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 312 TTGATGCGGTTACTGATGTTAAGCTAGAGAGTGTTGGTTATTTCGACAATCTAATGGAAA 371
Query 361 TACCTTACGATGATCTCCTTACTGATCAAATCCCTAAAGATGATGATGCAGAACTGCTTG 420
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 372 TACCTTACGATGATCTCCTTCCTGATCAAATCCCTAAAGATGATGATGCAGAACCGCTTG 431
Query 421 TCCAAATGCAGGT 433
|||||||||||||
Sbjct 432 TCCAAATGCAGGT 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22153258827
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5