BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939304
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62180.1 | Symbols: | Plant invertase/pectin methylesterase... 1029 0.0
> AT3G62180.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:23019623-23020479 REVERSE
LENGTH=857
Length=857
Score = 1029 bits (557), Expect = 0.0
Identities = 635/673 (94%), Gaps = 3/673 (0%)
Strand=Plus/Plus
Query 21 ATGAACACTCCATTCAAACTCTTCTTTCTCTTCCTCTTTGTCGCTGCAACCGCAACCGCT 80
|||||||||||| |||||||||||||||||||| | || || || ||||||||||| |||
Sbjct 1 ATGAACACTCCAATCAAACTCTTCTTTCTCTTCATATTCGTTGCCGCAACCGCAACGGCT 60
Query 81 GCGCCAGTCAAGCGAACGAACTACCTTTTCACACCGCACGCAAAAGCAGTAGCGGGAATT 140
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 61 AAACCAGTCAAACGAACGAACTACCTTTTCACACCGCACGCCAAAGCAGTCGCGGGAATC 120
Query 141 TGCACCGTTATCCCAACAAACACAAGTCTATGTTGCAAAACCCTTAAACACGTTCCTACC 200
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCACCGTTATCCCAACGGACACAAGTCTATGTTGCAAAACCCTTAAACACGTTCCTACC 180
Query 201 AATGACCCCATCGAATTAATCCGAGCATTAGTGGTTGCGGCTGAAACATCCGTCAAACAA 260
||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 181 AATGACCCCATCGAACTAATCCGAGCATTAGTGGCTGCCGCTGAAACATCCGTCAAACAA 240
Query 261 AGTGTGACTTTCCTCTCTGGAATCAAACCAAAACACAAATCAGACGCAACCGCAACGGCA 320
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 AGTGTGACTTTCCTCTCTGGAATCAAACCAAAACACATGTCAGACGCAACCGCAACCGCA 300
Query 321 GCGGTCAACAGCTGCGAGAAAAACTTGAAGTACGCGTTGGAAGATTTCGCCGATTTTTGG 380
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GTGGTCAACAGCTGCGAGAAAAACTTGAATTACGCGTTGGAAGATTTCGCCGATTTTTGG 360
Query 381 AAAGCTACGGGGAAAGATGTAACGACGTTGGCTCATAATTATTTTACGTGTAAAAAAGAG 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGCTACGGGGAAAGATGTAACGACGTTGGCTCATAATTATTTTACGTGTAAAAAAGAG 420
Query 441 TTAATGTCAATCATGGGGTATCATTCGACTTGTTTGGATGATATAGAAGACAAGAACTTG 500
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 421 TTAATGTCAATCATGGGGTATCATTCGACTTGTTTGGACGATATTGAAGACAAGATTTTG 480
Query 501 TTGAAGGAAGTGGAGATTGGGATTGGACTTGGGAAGAATCTAACAAGTGATTCTTTTGAT 560
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 TTGAAGGAAGTGGGGATTGGGATTGGAGTTGGGAAGAATCTAACAAGTGATTCTTTTGAT 540
Query 561 GTGTTTAATAATTTGAATACCATTTTCAAGACTTTTGGTATTAAGGTGAAGCTTAACGAG 620
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGTTTAATAACTTGAATACTATTTTCAAGACTTTTGGTATTAAGGTGAAGCTTAACGAG 600
Query 621 GAAGACACTTCGCCCCGACCGCCACCGTTGTCTGATTATTACTACTGATCAT---ATTAA 677
|||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||
Sbjct 601 GAAGACACTTCGCCCCGACCGCCACCCTTGTCTGATTATTATTACTGATGATCGTATTAA 660
Query 678 GGGATTGGATGTA 690
|||||||||||||
Sbjct 661 GGGATTGGATGTA 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5