BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939308
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62230.1 | Symbols: | F-box family protein | chr3:23031531-... 929 0.0
> AT3G62230.1 | Symbols: | F-box family protein | chr3:23031531-23033128
FORWARD LENGTH=1598
Length=1598
Score = 929 bits (503), Expect = 0.0
Identities = 1120/1409 (79%), Gaps = 78/1409 (6%)
Strand=Plus/Plus
Query 11 CAAAATCATCAACAATGTATTCAAGAAATCCACCGGTTGACATCATTTCGACG-TTATCA 69
||||||||| ||||||| | ||| ||| | || || ||||||||||||||| || |||
Sbjct 45 CAAAATCATTAACAATGGACTCAGGAAGTGCA---GTGGACATCATTTCGACGCTT-TCA 100
Query 70 GACTGT-CTGCTTGTTCTGATAATATCTTTCCTTCCCTTCAAGGACGTTTTGAAAACCAG 128
|||| | ||||| || ||||| || || |||| |||||||||| | ||||| |||||
Sbjct 101 GACT-TCCTGCTCGTCCTGATCATTTCGAACCTTTCCTTCAAGGAGGCTTTGAGCACCAG 159
Query 129 TATG-CTTTCCAAGCGCTGGCGATAC-T-TGTACCGGGAAGTGAAAAACATCTCTTTCAG 185
| | ||||||| |||||| || || | ||| || ||| || |||||||||||||||
Sbjct 160 T-CGCCTTTCCACCCGCTGGAGACACATATGT--CGCGAAACGAGAAACATCTCTTTCAG 216
Query 186 AGAGTCCGAAATGGTGACTTTTGCTG--GCA-ACCATATTGATCAG-TATTACCAAAGAG 241
|||| ||| || ||||| || |||| | | || ||| || | ||||||||||| |
Sbjct 217 AGAGGACGAGATCGTGACATTCGCTGATG-ATTCC--GTTGCTC-GCTATTACCAAAGGG 272
Query 242 C-ACAGTTGGTTGCCTATATGGTTGGTTGGGTTGACAATTTTACCGGTGGAGTTATTGAG 300
| || || |||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 273 CTGCA-TTAGTTGCCTATATGGTTGGTTGGGTTAACAATTTTACCGGTGGAGTTGTTGAA 331
Query 301 AGTTTCGAGCTTTGTCTCTCGAACTCGTATTCTTTCGAACAAGGTGTCACAAGACTGATC 360
|| ||||||||| ||||||| || |||||| |||| ||| |||| ||||| | |||||||
Sbjct 332 AGCTTCGAGCTTCGTCTCTCTAATTCGTATGCTTTTGAAGAAGGGGTCACCACACTGATC 391
Query 361 GAATTCGCAGTCTCCAAGAATGTCAAGCATCTTATTCTTGATCTCTCAGAGCGTCGCT-G 419
|||||||| |||||||||||||||||||||||| ||||||| |||||||| | ||| | |
Sbjct 392 GAATTCGCTGTCTCCAAGAATGTCAAGCATCTTTTTCTTGACCTCTCAGAACCTCGTTGG 451
Query 420 GAGAGTC-AGAGATGATGCAGCAGC-ATTAGAACGGGGTTTGATTCAAGTT-CCGGAAAG 476
| | | | | | || || ||| | |||||||| |||||||| |||| || ||||| ||
Sbjct 452 GTTA-CCAATA-ACGACGCTGCA-CAATTAGAACCGGGTTTGA-TCAAATTACCGGAGAG 507
Query 477 TTTTTACAA-ACTTACCACTCTCGTGACGTTGAAGTTATTCGGTTGCCGGTTT-AATCCA 534
||||||||| | |||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 508 TTTTTACAAGA-TTACCAGTCTCGTGACGTTGAAGTTATTCGGTTGCCGGTTTGAA-CCA 565
Query 535 TCAAGGCTTGCGAACCCGGGTTTGGTTAAAATCC-T-TTGCTTTCGTTGGATCCGTCTCG 592
|| ||||| ||||| |||||| |||| |||| || | || ||| || |||||||||||||
Sbjct 566 TCGAGGCTCGCGAAACCGGGTATGGTGAAAA-CCATGTT-CTTCCGCTGGATCCGTCTCG 623
Query 593 AGAATATC-TCGGCTTTGATAGCGAAGGCACCAT-TTCTCGAGA-CTTTGATCATGAAGA 649
||| | | |||||||||||||| ||| |||| | ||||||||| ||| || ||| || |
Sbjct 624 AGA-TGTTATCGGCTTTGATAGCAAAGACACC-TCTTCTCGAGATCTT-GAACATCAAAA 680
Query 650 ATTGTTGGGAGGTCGGTCTTGAAGCAATAACCGGATTTAACGACCGGGTAAGGAAGGTTG 709
| ||||||||| | |||||||| || |||||||||| |||||||||| ||| |||| |||
Sbjct 681 ACTGTTGGGAGATTGGTCTTGATGCGATAACCGGATATAACGACCGGTTAATGAAG-TTG 739
Query 710 -TATTT-AAGAACTGTGTG-TTCTCGGTGGAG-AAATCTACACTCGACGTTCCCAACATT 765
| ||| ||| | ||| | ||||| | | || ||| | ||||| ||||| ||||| |||
Sbjct 740 GT-TTTCAAGTATTGT-TCCTTCTCCGCGCAGCAAACC-ACACTGGACGTGCCCAATATT 796
Query 766 CAGATCTTCAAGTACTTTGGAAAAGT-TCATCACTTTGAGCTCGTGAGTGTGATTAGGGG 824
|||||||||||||||||||| ||||| | ||| ||||||| ||| ||||| || | |
Sbjct 797 CAGATCTTCAAGTACTTTGGGAAAGTCT-ATCGCTTTGAGTTCGCGAGTGCGAACAAGTT 855
Query 825 AATGGAAGAAGCTTATCTTGATTTTGGTGAAGCGATC-GACTACAATG-GTAGTACAGGA 882
|||||| || || ||||| || | |||||| || | | ||||| | | ||| |||||
Sbjct 856 AATGGAGGAGGCATATCTGGACTACCGTGAAGAGAGCCGT-TACAACGTG-AGTGCAGGA 913
Query 883 TCCC-AA-CTGTGTAATCTCCTCTATCA-TCTCC-GATCCGCTAGGACATTCACGATTTG 938
| || | ||| | | || |||| || | | | || |||| ||||||||| || ||
Sbjct 914 GCAATAATCAGTGGATT-TC-TCTA-CAGTATGTTG-TCTGCTAAGACATTCACAATCTG 969
Query 939 TCCATATCTTCTCCAACTGATCCAGGAGAGTGAAGATTCGGTTAGACTGAAAGAACGGAT 998
||| ||| | || ||| ||||||| ||| ||||||| |||| ||||||||| || |||
Sbjct 970 TCCGTATGTCCTTCAATTGATCCAAGAGTGTGAAGACCCGGTGCGACTGAAAGCACCGAT 1029
Query 999 GGAGACAAGACAGTTGGTACTGAAGTCTGCTCTGGAACCGAATGAGTTCATTGGAATCCG 1058
|||||||||||||||||| |||||| | | | ||||| |||||||| |||||||| |
Sbjct 1030 GGAGACAAGACAGTTGGTTCTGAAGACAAATTTTGAACCTAATGAGTTTGTTGGAATCAG 1089
Query 1059 ATTCATGATCAACAGCTGTCCATATTTGGAGATTCTGTCATTTCAGATAGTGGATCCTAG 1118
||||||| | ||||| | ||| ||| |||||| || ||||| ||||| |||| |||| |
Sbjct 1090 ATTCATGCTTAACAGTTCTCCGTATCTGGAGACACTCTCATTCCAGATGGTGGGTCCTCG 1149
Query 1119 GCTTATTGAT-ATGATGGTTCCTCAGTTCGATCCAGAGGCTTATTGGATGAATAACATCA 1177
|| || || | |||||| |||||| |||||||||||||||||||| | | || | ||
Sbjct 1150 GCCCATCGAAGA-GATGGTGCCTCAGATCGATCCAGAGGCTTATTGGGGGCAGAATACCA 1208
Query 1178 GTCAT-AAGTGTCTGAAGAGGACACTTAAGAAAGTGGAAGTCTGGAGCTTT-AGTGGGGG 1235
||||| || ||| |||||| ||||||||||||||||| || ||||||||| | ||| ||
Sbjct 1209 GTCATGAA-TGTTTGAAGAAAACACTTAAGAAAGTGGAGGTGTGGAGCTTTTA-TGGTGG 1266
Query 1236 TACGTACGAGTTACATGTCCTCAAGTATCTGATTCGCTATGGTCGTGTGTTGGAGAGAGT 1295
|||| ||||||||| ||| ||| ||||||||||||| ||||||||| |||||||||| ||
Sbjct 1267 TACGCACGAGTTACGTGTTCTCGAGTATCTGATTCGTTATGGTCGTATGTTGGAGAGGGT 1326
Query 1296 GGATCTGTATCTGCCAATTGGATTGAATGAGGAT-CAAATGCTTACGGCACGTGCTGCAG 1354
||||||||||| ||||||||||||| |||| || ||| ||||| || |||||||||||
Sbjct 1327 GGATCTGTATCAGCCAATTGGATTGGATGAT-ATTCAACTGCTTCCGATACGTGCTGCAG 1385
Query 1355 CTGACACTGTGGGAACAGAGTTTGAGGCT 1383
|||| | |||||| ||||| ||||||
Sbjct 1386 CTGATAGGGTGGGA---GAGTTCGAGGCT 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5