BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939309
Length=2478
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62240.1 | Symbols: | RING/U-box superfamily protein | chr3... 3864 0.0
> AT3G62240.1 | Symbols: | RING/U-box superfamily protein | chr3:23033442-23036765
REVERSE LENGTH=2701
Length=2701
Score = 3864 bits (2092), Expect = 0.0
Identities = 2346/2470 (95%), Gaps = 11/2470 (0%)
Strand=Plus/Plus
Query 4 CAAATTCAAGAAGAGACATGGATGATAGCTGTGCCGTCTGCGCTGACAATCTCGAATGGG 63
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 CAAATTCAGGAAGAGACATGGATGATAGCTGTGCCGTCTGCGCTGACAATCTCGAATGGG 155
Query 64 TTGCCTATGGATCTTGTGGTCACCGTGAGGTTTGCTCCACTTGCGTCGTTCGTCTCCGAT 123
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 156 TTGCCTATGGATCTTGTGGTCACCGAGAGGTTTGCTCCACATGCGTCGTTCGTCTCCGAT 215
Query 124 TCGTCCTCGACGATCCTCGCTGCTGTATTTGCAAGACCGAGTCTCCTATCGTTTTTGTCA 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 216 TCGTCCTCGACGATCCTCGCTGCTGTATCTGCAAGACCGAGTCTCCTATCGTTTTTGTCA 275
Query 184 CCAAGGCATTGGGTGATTATACGAGGACGATCACTGACTTCTCCACCTTCCCATCAGCAC 243
|||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 276 CCAAGGCATTGGGTGATTATACAAGGACGATCAATGATTTCTCCACCTTCCCATCAGCAC 335
Query 244 CAAGGGAAGGGCGAGTAGGAGCTTTCTGGTATCATGAAGACACTCAGGCTTTCTTTGATG 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CAAGGGAAGGTCGAGTAGGAGCTTTCTGGTATCATGAAGACACTCAGGCTTTCTTTGATG 395
Query 304 ACTTGGATCATTACAGGATGATCAAAGCTATGTGTAGACTCTCCTGCGGTGTTTGTGACA 363
|||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 396 ACTTGGATCAGTACAGGATGATCAAAGCTATGTGTAGACTTTCTTGCGGTGTTTGTGATA 455
Query 364 AGGCGGAAGATCAACCTAGAGAAGGAGGACCAAGACATCATCGGCAGAGGATTAAGAGCG 423
|| |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 456 AGACGGAAGATAAACCTAGAGAAGGAGGACCAAGACATCATCGTCAGCGGATTAAGAGCG 515
Query 424 TTGAACAGTTGAAGGGTCATTTATATCATAAGCACAAATTGCATATGTGTGGTTTATGTC 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TCGAACAGTTGAAGGGTCATTTATATCATAAGCACAAATTGCATATGTGTGGTTTATGTC 575
Query 484 TCGAAGGGCGAAAGATATTCATATGTGAACAAAAGTTGTATACTAGGGCACAACTGAACC 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TAGAAGGGCGAAAGATATTCATATGTGAACAAAAGTTGTATACTAGGGCACAACTGAACC 635
Query 544 AACACATACACACTGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGGGGTGGCTTCG 603
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 636 AACACATACAGACTGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGGGGAGGCTTCG 695
Query 604 CTGGACATCCTATGTGTGAATTCTGTAGGAATCCTTTCTATGGTGATAATGAATTGTATA 663
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CAGGACATCCTATGTGTGAATTCTGTAGGAATCCTTTCTATGGTGATAATGAATTGTATA 755
Query 664 CTCACATGTCTACAGAGCATTACACATGTCATTTATGCCAAAGGTCACAGCCAGGACAAT 723
||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 756 CTCACATGTCTACAGAGCATTACACCTGTCATCTATGCCAAAGGTCACAGCCAGGGCAAT 815
Query 724 ATGAATATTACAAAAACTATGATGACTTGGAGATTCATTTCCGTAGAGACCATTTCCTCT 783
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 816 ATGAATATTACAAAAACTATGATGACTTAGAGATTCATTTCCGTAGAGACCATTTCCTCT 875
Query 784 GTGAAGACGACTCCTGCCTTGCTAAGAAGTTCACAGTTTTCCAGAATGAATCAGAGTTGA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GTGAAGACGACTCCTGCCTTGCTAAGAAGTTCACAGTTTTCCAGAATGAATCAGAGTTGA 935
Query 844 AAAGGCATAACGCTATTGAGCATGGAGGTAAAATGTCTCGGTCTCAGCGAAGTGCTGCAT 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 AAAGGCATAACGCTATTGAGCATGGAGGTAAAATGTCTCGGTCTCAGCGAAGTGCTGCAT 995
Query 904 TACAGATACCAACAAGTTTCCGATACCGACGTGGAAATGATCAAGAGAATCGTCGTGGAA 963
|||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 996 TACAGATACCGACAAGTTTCCGATACAGTCGTGGAAATGATCAAGAGAATCGTCGAGGAA 1055
Query 964 GACCCCGATCATTTCGTCGCGAGCCTGGTGATGATGAATATAATCTTGCAGTTCATGCGG 1023
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1056 GACCCCGATCATTTCGTCGCGAGCCTGGTGATGAAGAATATAATCTTGCAGTTCATGCCG 1115
Query 1024 CTCTTCGTTTATCTGAGGCTGAGTATTCTCGGCAAGAGCCTGCTCCTCCACCCTCAAGTG 1083
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CTCTTCGTTTATCTGAGTCTGAGTATTCTCGGCAAGAGCCTGCTCCTCCACCCTCAAGTG 1175
Query 1084 CACCACCTGGATTCTCTGAAAACAACAACATACACGTGGATGATGCTGATCTTCTTCTTC 1143
||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1176 CACCACCCGGATTCTCTGAAAACAACAACATACACGTGGATGATACTGATCCCCTTATTC 1235
Query 1144 AGCCAATGGAATCTCTATCAACTACAGATATGGAACCCTCTTCACGATATCTTCAAGCCG 1203
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1236 AGCCAATGGAATCTCTATCAACTACAGATATGGAACCCTCTTCACGGTATCTTCAAGCTG 1295
Query 1204 TAGGAAGCTCTGGTGGTGGTGGTACACGTCTTGGAGAATCTGCTTTTCCTCCTCTTTCTG 1263
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1296 TAGGAAGCTTTGGTGGTGGTGGTTCACGTCTTGGAGAATCTGCTTTTCCTCCTCTTTCTG 1355
Query 1264 GTCAACCGAGATCTGGACAGAACGTAGAGAGTTTACCTACTAACACCATGGCTGCTCGTC 1323
| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1356 GGCAACAGAGTTCTGGACAGAACGTAGAGAGTTTACCAACTAACACCATGGCTGCTCGTC 1415
Query 1324 TAAGACGCCAAACAAATCGAACTACTACTGCTTCTGCTATTGCTAGTCCTTCTCAAGGAT 1383
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1416 TAAGACGCCAAACAAATCGAACTTCTACTGCTTCCGCTATTGCTAGTCCTTCTCAAGGAT 1475
Query 1384 GGCCAGTGGTTAACCGAGGCCCAGCG-CAAGCATCTATAACAAGTGGCGGTAATCATTCT 1442
|||||||| |||| |||||||||| | ||||||||||| |||||||| ||||||||||||
Sbjct 1476 GGCCAGTGATTAATCGAGGCCCAG-GACAAGCATCTATTACAAGTGGAGGTAATCATTCT 1534
Query 1443 TCTTCGGGATGGCCAGCAATAGGTCGAACGCCTGTACAAGCCTCTAGTTCTTCAGTCCAA 1502
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 TCTTCAGGATGGCCAGCTATAGGTCGAACGCCTGTACAAGCCTCTAGTTCTTCAGTCCAA 1594
Query 1503 TCTATGTCCCATAGCAGAGTATCACAGGCTCGACCGCTGGCTCCTACAGTTTCACAGGCT 1562
|||| |||||||| |||||| ||||| ||||||| |||||| || ||||| ||||||||
Sbjct 1595 TCTAGGTCCCATAACAGAGTTTCACAACCTCGACCTCTGGCTTCTGCAGTTCCACAGGCT 1654
Query 1563 GCTCGTAATGCGAACAGGATTCCTCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGA 1622
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 GCTCGTAATGCAAATAGGATTCCTCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGA 1714
Query 1623 TCACATCAGCCTTTTCATTCAGAGTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGT 1682
|||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1715 TCACTTCAGCCTTCTCATTCAGATTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGT 1774
Query 1683 AAGACATCATCCACCACTACACATGGATCATCAAACACTCAACCCCCTCCTGATGTTCAA 1742
|| |||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 1775 AAAACATCATCAACCACTACACAGGGATCGTCAAACACTCAACCCCCTCCAGATGTACAA 1834
Query 1743 TCTGCCAACAAGTCATTGATTGAGAAAATGCGATCTGCACTTGGTCATGATGAAGATGTA 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 TCTGCCAACAAGTCATTGATTGAGAAAATGCGATCTGCACTTGGTCATGATGAAGATGTA 1894
Query 1803 TTTGTGGCATTCAGGAATATATCAGGACAGTATCGTCAAGGTTCGATTGATGCAAAGACT 1862
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1895 TTCGTGGCCTTCAGGAATATATCAGGACAGTATCGTCAAGGTTCCATTGATGCAAAGACT 1954
Query 1863 TATTTGGAATATGTGAAAGGATATGGATTGTCTCACTTGGTTATTGATCTTGCTAGACTG 1922
|||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1955 TATTTGGAGTATGTGCAAGGTTATGGATTGTCTCACTTGGTTATTGATCTTGCTAGACTG 2014
Query 1923 TGTCCTGACCCTAAAAGGCAGAAGGAACTCATTGATACCCATAATACCAGTTTGAGAGAA 1982
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2015 TGTCCTGACCCTAAGAGGCAGAAGGAACTCATTGATACCCATAATGCCAGTTTGAGAGAA 2074
Query 1983 GAAGATTCAAAGGAGAATGGTCGG-GCTGCTGCCCAGAGCTCTTCTCAACCTAAAGATAG 2041
|| ||||||||||| ||||||||| | |||||| |||||||||||||| |||||||| ||
Sbjct 2075 GAGGATTCAAAGGATAATGGTCGGAG-TGCTGCGCAGAGCTCTTCTCAGCCTAAAGAGAG 2133
Query 2042 TCAAAGTTCAAAGAAAAACAAAGGAAAAGCTGTGAAAGTTGTTGACCCGAAAGAAACATT 2101
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2134 TCAAAGTTCAAAGAAAAACAAAGGAAAAGCTGTGAAAGTTGTTGACCCTAAAGAAACACT 2193
Query 2102 AGCAGATAACTTTATGGACACAGTAAGGAGATTACAATCTTCTCAGAATCCCCAGGAAGA 2161
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2194 AGCAGATAACTTTATGGACACAGTAAGGAGATTACAATCTTCTCAGAATCCACAGGAAGA 2253
Query 2162 AGAAGAGGTG---ATATCTAAGGATAAGAATTCTTATAGGTCAGACAAAGGTAAATCACA 2218
|||||||| | ||||| |||||||||||| | ||||| ||||||||||| ||||||||
Sbjct 2254 AGAAGAGGAGGCGATATCAAAGGATAAGAATACCTATAGATCAGACAAAGGCAAATCACA 2313
Query 2219 AGTAACAGGAACTGATTCTTCTTCAACCGGAAACAAGCAGCAACGTAAGAAAACTTCTAA 2278
|||| |||||| ||||||||||| || |||| ||| |||||||||||||||||||||||
Sbjct 2314 AGTAGTAGGAACGGATTCTTCTTCCACAGGAAGCAAACAGCAACGTAAGAAAACTTCTAA 2373
Query 2279 GTTTCACAGAGTACGGCTTGGTGATGGATCAATGGCTGCCTTACTAGATCTTAACAATTC 2338
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 2374 GTTTCACAGAGTACGGCTTGGAGATGGATCAATGGCTGCCTTGCTGGATCTTAACAATTC 2433
Query 2339 TAAC-CGTGAGTCTGAACAAGAATCAAAGGATGGTAATTCCAACAGTAACCAAAATCAGA 2397
|| | || ||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 2434 TA-CTCGCGAGTCTGAACAAGAATCTAAGGATAGTAATTCCAACAGTAACCAAAATCAGA 2492
Query 2398 CCGGTGGTTTACCGGTTGGAGGCGTTTGGCGTAAAGGAGGTGCAAACCTTTTCTCGTAGA 2457
||||||||||||||||| | || |||||||||||||||||||| |||||||||||||| |
Sbjct 2493 CCGGTGGTTTACCGGTTCGTGGGGTTTGGCGTAAAGGAGGTGCTAACCTTTTCTCGTAAA 2552
Query 2458 GA-CTTAATT 2466
|| || ||||
Sbjct 2553 GAACT-AATT 2561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122959177293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5