BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939324
Length=1126
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62370.1 | Symbols: | heme binding | chr3:23080759-23083282... 1796 0.0
> AT3G62370.1 | Symbols: | heme binding | chr3:23080759-23083282
FORWARD LENGTH=1164
Length=1164
Score = 1796 bits (972), Expect = 0.0
Identities = 1069/1117 (96%), Gaps = 1/1117 (0%)
Strand=Plus/Plus
Query 2 TTCCGGAAGAGAAATCAAAATGCTTCAGCTCGTGGTTGTGGCGTGGCTCTTGATTTTCAC 61
|||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 12 TTCCGGTAGAAAAATCAAAATGCTTCAGCTCGTGGTTGTAGCGTGGCTCTTGATTTTCAC 71
Query 62 GGCGGAGACCGTCGTGTCTCACCAGGAATCCGGCGAATGGAGTTGTGAATCGGACTCGGA 121
||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGCGGAGACGGTTGTACCTCACCAGGAATCCGGCGAATGGAGTTGTGAATCGGACTCGGA 131
Query 122 GATCCAGGTCATAGCCGATTTCAGACCGGGGATTATCACTCTCGATGGTCACAACGACGA 181
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 132 GATTCAGGTCTTAGCCGATTTCAGACCGGGGATTATCACCCTCGATGGTCACAACGATGA 191
Query 182 CTGGAAGGACATTGACGGCTCCGAGTTCCCTCTCCGACCTGCACTTGATCCGGACGCCGA 241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 192 CTGGAAGGACATTGACGGCTCCGAGTTCCCGCTCCGACCTGCACTTGATCCGGACTCCGA 251
Query 242 TCACGAGTATGACGCCGGAAAGATGACAGTCAAGGCACTACATGATGGTCGAGATATCTA 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TCACGAGTATGACGCCGGGAAGATGACAGTCAAGGCACTACATGATGGTCGAGATATCTA 311
Query 302 CTTTATGCTGGAAATTGATGGAAATTACGCTTATGATAAAGGTGAAAACAACAAGTGCCC 361
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 312 CTTTCTTCTGGAGATTGATGGAAATTACGCTTATGATAAAGGTGAAAACAACAAGTGTCC 371
Query 362 TTCAGTGGCTCTCATGTTCCAAATTGGTGATCAAGCTACTTATCACAATATGGGTGGTTG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TTCAGTGGCTCTCATGTTCCAAATTGGTGATCAAGCTACTTATCACAATATGGGTGGTTG 431
Query 422 TAAAGAAGGGACAGACTCTTGTACCAGCAAGGCTTGCAGAGGCTTCGAGGTTGATATTAT 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TAAAGAAGGGACAGACTCATGTACCAGCAAGGCTTGCAGAGGCTTCGAGGTTGATATTAT 491
Query 482 GCATTTCTCCATTGGAAATGCTATTCCAGGACGGCTTTACGGTGGTAATCCAATAGACAA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GCATTTCTCCATTGGAAATGCTATTCCAGGACGGCTTTACGGTGGTAATCCAATAGACAA 551
Query 542 CAGGGAAGGAAATGGAGGTGACAGATTTGGTCATCTGGTTGACATTTATGCCTGGAATCC 601
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 552 CGGGGAAGGAAATGGAGGTGACAGATTTGGTCATCTGGTTGACATTTATGCATGGAATCC 611
Query 602 ACATTGTCGGTACCTTGATGGTCTTGGACCCTCAGGAAATGATTCTAGCGCACAGAACGA 661
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 612 ACATTGTCGGTACCTTGATGGTCTTGGACCCTCAGGAAATGATTCCAGTGCACAGAACGA 671
Query 662 CTGGCATGGAGCATGGTGGCACAGCAGCTTCACTACTCTGTCAGGTTATGTAGAGGAAGA 721
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 672 TTGGCATGGAGCGTGGTGGCACAGCAGCTTCACCACTCTATCAGGTTATGTAGAGGAAGA 731
Query 722 CAGCCCTTACACGCCAAATGGCAAGAAAGGAACTTACTATTTTGAGTTCTCAAGGCCCTT 781
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 732 CAGCCCTTACACGCCAGATGGCAAGAAAGGAACTTACTATTTTGAGTTTTCAAGGCCCTT 791
Query 782 GAGGACAATGGACCGTCTCCAACAGGATGTTCAGTTCAAGCTTGGCTCGCCTGCCAAAAT 841
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 792 GAGGACAATGGACCGTCTCCAACAGGATGTTCAGTTCACGCTTGGCTCGCCGGCCAAAAT 851
Query 842 GTCGGTTGCATTCTGGTACCCAATGGACAACAAACCGTGGCACGGATCAGGACACTACAC 901
||| || ||||||||||||||| |||||| |||||| ||||| |||||||||||||||||
Sbjct 852 GTCCGTCGCATTCTGGTACCCAGTGGACAGCAAACCATGGCATGGATCAGGACACTACAC 911
Query 902 GATCAACTGCGATTGGACACCGCTAGATATCTCCTCGGGATCTTCTTCGGGTCTCACCGC 961
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 912 GATCAACTGCGATTGGACACCGCTAGATATCTCCTCGGGGTCTTCTTCGGGTCTCACGGC 971
Query 962 TTCAACTGTGAAGGGCTCTAGCGATGGAACCAGCATTTCAGCCATTTTGTTGTCCATGAT 1021
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 972 TTCAACTGTCAAGGGCTCTAGCGATGGGGCCAGCATTACAGCCATTTTGTTGTCCATGAT 1031
Query 1022 TTCTCTTGTGTTTTCGGGTTTTATTGCGTATAGGCTATTTAGTCCCAGGGACGTTCCTTT 1081
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 1032 ATCTCTTGTGTTTTCGGGTTTTATTGCATATAGGCTATTTAGTCCCAGGAACGTTCCATT 1091
Query 1082 CACACCCATGGAAAACAATCTGTAGGAGAAATA-GGT 1117
||||||||||||||||||||||||||||||||| |||
Sbjct 1092 CACACCCATGGAAAACAATCTGTAGGAGAAATATGGT 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55220599500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5