BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939326

Length=910
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62380.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box ass...   248    7e-65


> AT3G62380.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box associated 
interaction domain (InterPro:IPR017451); BEST Arabidopsis 
thaliana protein match is: F-box family protein (TAIR:AT1G71320.1); 
Has 422 Blast hits to 419 proteins in 26 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 420; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 
| chr3:23083523-23085035 REVERSE LENGTH=1247
Length=1247

 Score =  248 bits (134),  Expect = 7e-65
 Identities = 232/277 (84%), Gaps = 16/277 (6%)
 Strand=Plus/Plus

Query  500   AATGAAGCTTGCAGCTGTGGATCTTCGCACAGAAAGC-TTTCGTTATGTGTTGTTACCGA  558
             ||| ||||| |||||  | ||||||| |||||||| | ||||||||||||    ||||||
Sbjct  786   AATAAAGCTGGCAGCCATCGATCTTCACACAGAAA-CATTTCGTTATGTGCCACTACCGA  844

Query  559   GTTGGTACATC-AATATCTCCGAAAGTGTCAACTTGTGGAGTCTAAAAGATCGTTTATGT  617
             ||||||||| | |||| || | |||||||  |||| ||||||||||||||| ||||||||
Sbjct  845   GTTGGTACACCAAATA-CTGCAAAAGTGTGTACTTATGGAGTCTAAAAGATAGTTTATGT  903

Query  618   TTATCTGATGTGCTACAATGTCAATATCCGAGTGTGGACGTATGGAGTTTGCAGCAAGAA  677
              ||||||||||||||| |    || |||||||||||||||||||||||||||||||||||
Sbjct  904   GTATCTGATGTGCTAC-A----AA-ATCCGAGTGTGGACGTATGGAGTTTGCAGCAAGAA  957

Query  678   GATCCGAGTGTGAAGTGGGAAAAGAT-TCATTCAATTAAAATTTTAAGCATCGA-TAGTT  735
             || || |||||||||||||||||||| |  |||| |||| || ||||||| ||| | |||
Sbjct  958   GAGCCTAGTGTGAAGTGGGAAAAGATGTT-TTCAGTTAATATCTTAAGCA-CGAATTGTT  1015

Query  736   TAGACGTAAACTTTTGGAAACT-TGGTCTGGCGGCTT  771
             |||||| |||||||||||| || || ||| || ||||
Sbjct  1016  TAGACGCAAACTTTTGGAAGCTCTG-TCTAGCTGCTT  1051



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44457220095


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5