BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939327
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47360.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 272 4e-72
> AT2G47360.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02570.1);
Has 58 Blast hits to 55 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19437800-19438871
FORWARD LENGTH=1072
Length=1072
Score = 272 bits (147), Expect = 4e-72
Identities = 644/868 (74%), Gaps = 97/868 (11%)
Strand=Plus/Plus
Query 29 CGGCGAAAAGCGGTGGAGAGAGGCGGAGCAGCTAGTGATTGAGCAATTCCGGCTAATCAC 88
||||| |||| || ||| ||||||||||||||| ||| || ||| |||||||| | ||
Sbjct 32 CGGCGGAAAGTGGCGGAAAGAGGCGGAGCAGCTGGTGGTTAAGCCTTTCCGGCTGGTGAC 91
Query 89 CACCActcttctcagcctcctcctccctctctctttcctcctccttagccgtctctcctc 148
|| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 92 AACAACTCTCCTCAGCCTTCTCCTTCCTCTCTCTTTCCTCCTCCTTAGTCGTCTCTCTTC 151
Query 149 tgccgccttcctcctctcctt-ATC--A--TC-GACGC---C---G-CAAAATTC--CGA 193
|| | |||||| ||||||| | | | || | ||| | | || |||| ||
Sbjct 152 AGCTTCTTTCCTCTTCTCCTTAACCAAATCTCAGCCGCAAACAGAGTCATCATTCTTCGT 211
Query 194 C-TAT-T-T-CTTCCTCAACAC-AATCCCTGC-ACTAC-TATACGCCGTCGTTTCAAT-A 245
| | | | | ||| || | | ||| || || | | | ||||||| |||||||| | |
Sbjct 212 CTTCTCTCTGTTTCTTC-GCGCGAAT-CCGGCGA-T-CGTATACGCTGTCGTTTC-GTCA 266
Query 246 ATAA-CTGTTCATACTCTAATCCACT-GCTTAATCACCAAGATCAGAACTTCGGAAGATA 303
|||| | ||| | |||||| | | | |||||| ||| ||||||| | || | ||||
Sbjct 267 ATAAGC-GTTTACACTCTAGTTC-TTGGCTTAACCACAAAGATCACAGCTAC---AGAT- 320
Query 304 CC-AACCGTTCGATCGGTTTCTATTACCCACGTGTCAGCATCGCGTGGCTCATC-CTTTT 361
|| || | |||||| | || ||| |||| |||||||||||||||||| | | || ||
Sbjct 321 CCAAAGCATTCGAT---TGCCTTTTATCCACATGTCAGCATCGCGTGGCTTA-CACTCTT 376
Query 362 AATTCTTCAATTCTCCGTCGGAT-TAGGCCTTC-AAGTAACGATGTCAAAAGGAGTCAAC 419
|| ||||| |||||||||| | |||||| || || |||||| || ||||
Sbjct 377 CCTTGTTCAAATCTCCGTCGG-TATAGGCC-TCGAAACAACGATCTC---------CAAC 425
Query 420 GGGATT-GTCAACGGTAA--TAATCACAATTTCTTGACCAGACTCT-TGTTCTTCTTTGG 475
|| || ||| ||| || || | ||||||||||| ||| || | |||| ||||||||
Sbjct 426 -GGTTTAATCATCGG-AAGCGAA-CGCAATTTCTTGAGCAGGCT-TGTGTTTTTCTTTGG 481
Query 476 TCTCCTTGAGATGATACTTCAATGGTACCGAGTGATCGTGAAGA-CGGTGGTGGA-AAGC 533
||| | |||| |||| |||| ||||| |||||||||||| ||| |||||||||| || |
Sbjct 482 TCTTCATGAGGTGATGCTTCTGTGGTATCGAGTGATCGTG-AGACCGGTGGTGGATAA-C 539
Query 534 -GGTT-TT-GG-CG-G--GA--G---A-G-A-AGAAGAGACGGTGGTGGAGAGGGTGGCT 578
||| || || | | || | | | | ||||||||||||||||||||||||||||
Sbjct 540 ACGTTGTTAGGAGGAGAAGACGGTCAACGAAGAGAAGAGACGGTGGTGGAGAGGGTGGCT 599
Query 579 TTGGCCGCTAGTTGCGGTG-CTTTATGGTGGTGGAAGCTACGGGAAGAGGTAGAGGCTTT 637
||||||| ||| || || | | || |||||||||||||| || || || |||||||||||
Sbjct 600 TTGGCCGTTAGCTGTGG-GACCTTGTGGTGGTGGAAGCTTCGAGATGAAGTAGAGGCTTT 658
Query 638 GGTTGGCGTGATGGAGGTTAAGAGAGCATTGTTATTGTTATCCATCGACGTCGATTACAA 697
|||||| ||| |||| ||| ||||||||||| ||||||| | | | | ||| ||
Sbjct 659 GGTTGGTGTGGCAGAGGCTAAAAGAGCATTGTTGTTGTTATT-ACCAAT-T-GATGGTAA 715
Query 698 TTTAAATAGTATCGTT--GACT-TAGGAACAATAGATTTCT-TGAACTGGTTGTTGTATT 753
| | || || | ||| || | | |||||| | ||||| | |||| |||| | | ||||
Sbjct 716 TGTCAAC-GT-TAGTTTTGA-TGTGGGAACAGTTGATTT-TGTGAATTGGTGGCTATATT 771
Query 754 ATTTGATAGTGACGATTGGTGTGGTTAGGATCGTGAAAGGGTGTTT-TCGGGTTGGAATG 812
|| || | |||||||||||| ||||||||||| | ||||||| ||| | || |||| |||
Sbjct 772 ATATGGTTGTGACGATTGGTATGGTTAGGATCATTAAAGGGTCTTTGT-GGTTTGGGATG 830
Query 813 ATCTTGCTTTTCGAGCAAGTTAGGAGAA 840
|| ||||||||||| |||| ||| ||||
Sbjct 831 ATTTTGCTTTTCGAACAAGGTAGTAGAA 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5