BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939329
Length=332
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41920.1 | Symbols: | GRAS family transcription factor | ch... 292 1e-78
> AT5G41920.1 | Symbols: | GRAS family transcription factor |
chr5:16779749-16781245 FORWARD LENGTH=1497
Length=1497
Score = 292 bits (158), Expect = 1e-78
Identities = 225/256 (88%), Gaps = 9/256 (4%)
Strand=Plus/Plus
Query 1 GAAGCCGTGGTGGTTCACTAGATGCAACACCGGTTATATGACGTCACCCGGAACGATCTC 60
||||| ||||||||||| | |||||| |||||||||||||| || || ||||| |||||
Sbjct 939 GAAGCTGTGGTGGTTCATTGGATGCAGCACCGGTTATATGATGTTACAGGGAACAATCTC 998
Query 61 GAGACGTTGGAGATTTTACGGAAGCTGAAACCGAATCTGATTACGGTGGTGGAGCAAAAA 120
||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 999 GAGACGTTGGAGATTCTACGGAGGCTGAAACCGAATCTGATCACGGTGGTGGAGCAAGAA 1058
Query 121 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGGAGATTCGTGGAGGCTTTGCAGTACTAT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1059 TTGAGCTACGACGATGGAGGAAGCTTTTTAGGAAGATTCGTGGAGGCTTTGCATTATTAT 1118
Query 181 ------TA-TA-G-CGCGCTTGGGGATGGTTTGGGTGAGGAGAGTGGTGAGAGATTCACG 231
| | | |||||| || ||||| |||||||| |||||||||||||||||||||
Sbjct 1119 AGCGCGTTGTTTGACGCGCTAGGAGATGGATTGGGTGAAGAGAGTGGTGAGAGATTCACG 1178
Query 232 GTGGAGCAGATTGTTT 247
||||||||||||||||
Sbjct 1179 GTGGAGCAGATTGTTT 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15482466692
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5