BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939331
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62400.2 | Symbols: | unknown protein; Has 4 Blast hits to ... 361 2e-99
> AT3G62400.2 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:23089641-23090737 FORWARD LENGTH=517
Length=517
Score = 361 bits (195), Expect = 2e-99
Identities = 218/229 (95%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 10 GGTTGAGAAGAAATGGCAGGACACAAGGTCGCGCATGCCACATTGAAAGGCCCAAGTGTT 69
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 63 GGTTGAGAAGAAATGGCAGGACACAAGGTTGCGCATGCCACATTGAAAGGCCCGAGTGTT 122
Query 70 GTGAAGGAATTGATTATTGGTTTGACACTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATG 129
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 123 GTCAAGGAATTGATTATTGGTTTGACGCTTGGTTTAGCTGCTGGTGGTCTCTGGAAGATG 182
Query 130 CACCATTGGAATGAGCAGAGGAAAACCAGAACTTTCTATGATTTGCTTGAAAGAGGTGAG 189
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 183 CACCATTGGAATGAGCAGAGGAAAACTAGAACTTTCTATGATTTGCTTGAGAGAGGTGAG 242
Query 190 ATCAGTGTTGTCGCCGCTGAAGAGTGAATGA-AATGCCTCCCTCTCACT 237
||| ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 243 ATCGGTGTTGTCGCCTCTGAAGAGTGAATGGGAATGCCTCTCTCTCACT 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5