BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939339

Length=252
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62460.1 | Symbols:  | Putative endonuclease or glycosyl hyd...   368    1e-101
  AT3G62530.1 | Symbols:  | ARM repeat superfamily protein | chr3...   291    3e-78 


> AT3G62460.1 | Symbols:  | Putative endonuclease or glycosyl hydrolase 
| chr3:23104665-23105624 REVERSE LENGTH=868
Length=868

 Score =  368 bits (199),  Expect = 1e-101
 Identities = 209/214 (98%), Gaps = 0/214 (0%)
 Strand=Plus/Plus

Query  1    CATCTCTCTCGTCTTCCTTTACGCCGTCAAAACCATGTTTCTAAGTCAGTGCCGGAGCTG  60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  12   CATCTCTCTCGTCTTCCTTTACTCCGTCAAAACCATGTTTCTAAGTCAGTGCCGGAGCTG  71

Query  61   TAAACCTTTGCTCGAGTCTCGTCTACCTTTGCTCCGCctctctctctctAAATGTCTCGA  120
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  72   TAAACCTTTGCTCGAGTCTCGTATACCTTTGCTCCGCCTCTCTCTCTCTAAATGTCTCGA  131

Query  121  TCAGTCCTTCAAAACCACGGCTAGTAGCGAATACGGGAGTAAGATCCCTGATGCTCTTCT  180
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  132  TCAGTCCTTCAAAACCACGGCTAGTAGCGAATACGGTAGTAAGATCCCTGATGCTCTTCT  191

Query  181  GGGACATCGACGACTAGAAGATCATAAGGCAAGC  214
            |||||||||| |||| ||||||||||||||||||
Sbjct  192  GGGACATCGAAGACTGGAAGATCATAAGGCAAGC  225


> AT3G62530.1 | Symbols:  | ARM repeat superfamily protein | chr3:23132138-23133298 
FORWARD LENGTH=924
Length=924

 Score =  291 bits (157),  Expect = 3e-78
 Identities = 163/166 (98%), Gaps = 0/166 (0%)
 Strand=Plus/Plus

Query  1    CATCTCTCTCGTCTTCCTTTACGCCGTCAAAACCATGTTTCTAAGTCAGTGCCGGAGCTG  60
            |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct  48   CATCTCTCTCGTCTTCCTTTACTCCGTCAAAACCATGTTTCTAAGTCAGTTCCGGAGCTG  107

Query  61   TAAACCTTTGCTCGAGTCTCGTCTACCTTTGCTCCGCctctctctctctAAATGTCTCGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  108  TAAACCTTTGCTCGAGTCTCGTCTACCTTTGCTCCGCCTCTCTCTCTCTAAATGTCTCGA  167

Query  121  TCAGTCCTTCAAAACCACGGCTAGTAGCGAATACGGGAGTAAGATC  166
            |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  168  TCAGTCCTTCAAAACCACGGCTAGTAGCGAATACGGTAGTAAGATC  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11461046772


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5