BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939342
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62560.1 | Symbols: | Ras-related small GTP-binding family ... 1035 0.0
> AT3G62560.1 | Symbols: | Ras-related small GTP-binding family
protein | chr3:23137426-23139045 FORWARD LENGTH=860
Length=860
Score = 1035 bits (560), Expect = 0.0
Identities = 603/623 (97%), Gaps = 5/623 (1%)
Strand=Plus/Plus
Query 5 AGAGAGAAGAAGAAGCGATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTCG 64
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 98 AGA-AGAAGAAGAAGCGATGTTCCTGGTGGATTGGTTCTATGGAGTTCTGGCAACTCTGG 156
Query 65 GATTGTGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCA 124
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GACTATGGCAGAAAGAAGCGAAGATTCTGTTTCTAGGTCTCGACAACGCCGGCAAAACCA 216
Query 125 CCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 CCTTGCTTCACATGTTAAAGGACGAGAGACTGGTCCAGCATCAGCCGACACAGCATCCGA 276
Query 185 CATCGGAAGAGCTAAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATC 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 CATCGGAAGAGCTTAGTATCGGCAAAATCAAGTTCAAAGCCTTCGATTTGGGAGGTCATC 336
Query 245 AGATTGCACGCAGAGTCTGGAAGGACTACTATGCTAAGGTTGATGCAGTGGTATACCTAG 304
||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 337 AGATTGCTCGTAGAGTCTGGAAGGACTATTACGCTAAGGTTGATGCAGTGGTATACCTAG 396
Query 305 TGGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCT 364
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TTGATGCATATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAGCTTGACGCTCTTCTCT 456
Query 365 CTGATGAATCCCTAGCAAATGTCCCTTTCCTCGTTCTTGGAAACAAAATCGACATTCCTT 424
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 457 CTGATGAATCCCTAGCAAATGTCCCTTTCCTCATCCTTGGAAACAAAATCGACATTCCGT 516
Query 425 ACGCTGCATCAGAAGACGAGCTACGTTATCATCTAGGCCTCACCAATTTCACCACTGGGA 484
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 517 ACGCTGCATCAGAAGACGAGCTGCGTTATCATCTAGGCCTCACCAGTTTCACCACTGGGA 576
Query 485 AAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCCCTTGAGGTGTTCATGTGCAGCA 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 577 AAGGTAAAGTGAATCTAGCAGGAACAAATGTTCGTCCTCTTGAGGTGTTCATGTGCAGCA 636
Query 545 TTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAGA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TTGTCAGAAAGATGGGTTACGGCGAAGGATTTAAATGGGTTTCTCAATATATCGACTAGA 696
Query 605 TCAAT--TAT--AAGTCTTATCT 623
||||| ||| |||||||||||
Sbjct 697 TCAATCATATTTAAGTCTTATCT 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040019906
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5