BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939348
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62620.1 | Symbols: | sucrose-phosphatase-related | chr3:23... 1367 0.0
> AT3G62620.1 | Symbols: | sucrose-phosphatase-related | chr3:23159783-23161854
FORWARD LENGTH=1387
Length=1387
Score = 1367 bits (740), Expect = 0.0
Identities = 1025/1153 (89%), Gaps = 58/1153 (5%)
Strand=Plus/Plus
Query 1 TCTTTCTTCCCGGCGGAGCGACTACGATGTTTGCGGCGGTGCGAGTACGAGCTTCTCTTA 60
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 37 TCTTTCTTCCCGGCGGAGCGACTACGATGTTTGCGGCGGTGAGTGTACGAGCTTCTCTCA 96
Query 61 AAACTTTGTTCCATGGCAGACACAGCTCATCTTTCAGCCGATATTGTGAAATTGCAGCGA 120
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 97 AAACTTTGTTCCATGGAAGACACAGCTCATCTTACAGCCGATATTGTGAAATTGCAGCGA 156
Query 121 TTTCGAAGCATATTTCACAAGATAGATTCAGTGATGG-AATGCTGATTCTGAATAGCTTG 179
||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 157 TTTCGAAGCGTATTTCACAAGATAGATTCAGTGATGGAAAT-CGGATTCTGAATAGCTTG 215
Query 180 CGATTATCTGGAAATGGAGTAGCAATCAAATTGCTCAACCGCGCATTTCATAGTTCTCCA 239
|||||||||||||||||||| ||||||| || ||||| ||| ||||||||||||||||
Sbjct 216 AAATTATCTGGAAATGGAGTAGGAATCAAACTGTTCAACTGCGGATTTCATAGTTCTCCA 275
Query 240 CCGTGTAAT-TAC-TCGGAATCTGATGTAGGAGTGAAAACTCATGCACCTGCGTTATTTA 297
| |||| | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 CAGTGT--TGTACATCAGAATCTGATGTAGGAGTGAAAACTCATGCACCTGCGTTATTTA 333
Query 298 GTCATCTTGAGGATGATGATTATTTCTCAGAGTTGGGTTCTGTAGAAAAAGAAGCGGATC 357
|||||||||| | |||||||||||||||||||||||| |||||||||||||| | |
Sbjct 334 GTCATCTTGA-G--GATGATTATTTCTCAGAGTTGGGTCCTGTAGAAAAAGAA---G-T- 385
Query 358 GGAATGTGATTGTGAAGATGTTAACTGAGAAGCCAGAGCCTGTTCAGGTTGAGAATCCAG 417
|| | ||| | | ||| | | || | | ||| |||| | |||||| ||||
Sbjct 386 GG-A--TGA----G-A-ATG-TGATTGTG-A---AGA---TGTT-A-ACTGAGAAGCCAG 426
Query 418 TGATATCTCTGAATACTAAAGGCaagaagaaaaagaaaaagaagaagaagCAGGAACAAG 477
||||||||||||| ||||||||||| ||||||||| ||| | |||||||||||| | ||
Sbjct 427 TGATATCTCTGAAAACTAAAGGCAATAAGAAAAAG--AAA-ACGAAGAAGCAGGAGCTAG 483
Query 478 CTTCTGATTCAATTTCGAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTTGGAAAG 537
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CTTCTGATTCTATTTCCAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTTGGAAAG 543
Query 538 TTAATGGCAAGAAAAAGACGGAAGCACATGCTTCTTCACCAGCAAGAGATGCTACAGATT 597
| ||||||||||| |||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 544 TAAATGGCAAGAAGAAGACGGAAGCAAATGCATCTTCACCAGCAAAAGATGCTACAGATT 603
Query 598 CAAA--TATTCCTTACTCCAAGCCAACCATGTCATCGTCTCAAATTCAAGATCACAAATC 655
|||| | ||| || |||||||||||| | ||||||||||||| |||||||||| |||||
Sbjct 604 CAAAGGT-TTCATT-CTCCAAGCCAACTAAGTCATCGTCTCAAGTTCAAGATCAGAAATC 661
Query 656 CAAATCTCAAAACATAATCAGTCCCAGTTCTGAGCCAGG-AGACGAAAATAGCTCCAAGG 714
|||||||||||| | ||||||||||||||||||||| || | |||||| || ||||||||
Sbjct 662 CAAATCTCAAAAGAAAATCAGTCCCAGTTCTGAGCC-GGAAAACGAAACTATCTCCAAGG 720
Query 715 GTTCTGCTACCTCCAATACACCCTCAAATCATCCCTCTTCAGTACTCGTTATAAGGATTG 774
||||||| ||||||||| | | | | | ||||||||||||||||||||||||||
Sbjct 721 GTTCTGCGACCTCCAAT--A----C--A-C-T--CTCTTCAGTACTCGTTATAAGGATTG 768
Query 775 GTAATCTAAATTCGAAAACAGCTGATTCAATGATACACTCGATGTGCTTGTCGATTTGCC 834
|||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 769 GTAATCTAAACTCGAAAACAGCTGATTCATTGATACACTCGATGTGCTTTTCGATTGGCC 828
Query 835 CTCTCGAGGGGATTGCTAGGGTTAATGAGGACACTGTTGACGTTTTATTTCGAGTGAAAA 894
||||||| ||| || ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 829 CTCTCGAAGGGCTTACTAGGGTTAATGAGGACACTGTTGACGTTTTATTTAGATTGAAAG 888
Query 895 ACC-GAAACGAAGCAGATTCTATACTGGAAGAGCTAAAAGATGCAACCGTAGATAACTCT 953
||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 889 ACCTG-AAGGAAGCAGATTCTATACTGGAAGAGCTAAACGATGCAACCGTAGATAACTCT 947
Query 954 CAATGGACGGCTGAGATTGTACAAGAAGCGGAAGAAGGTTCGAAAAATCAAATGGGTATG 1013
|||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||
Sbjct 948 CAATGGACGGCTGAGATTGTACTGGAAGCCGAAGAAGCTTCCAAAAATCAAATGGGTATG 1007
Query 1014 AGAATCACAAGCTGT-TACGAAGATTTGGATAAGCAACTGGTAATGCAGCGCATTCTTGG 1072
|| ||||| || ||| | |||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1008 AGGATCACCAGTTGTCT-CGAAGATTTGGATAAGCAACTGTTAATGCAACGCATTCTTGG 1066
Query 1073 AAAAGACTTGGAAGTTCTGCTCCATTCAGTAATGCATCTGGAGAATCACCCAATGGCTCG 1132
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1067 AAAAGACTTGGAAGTTCTGCTCCATTCAGTTATGCATCTGGAAAATCACCCAATGGCTCG 1126
Query 1133 AGGAAGAGACTAA 1145
|||||||||||||
Sbjct 1127 AGGAAGAGACTAA 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5