BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939349
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62630.1 | Symbols: | Protein of unknown function (DUF1645)... 1797 0.0
> AT3G62630.1 | Symbols: | Protein of unknown function (DUF1645)
| chr3:23163747-23165195 REVERSE LENGTH=1449
Length=1449
Score = 1797 bits (973), Expect = 0.0
Identities = 1120/1190 (94%), Gaps = 13/1190 (1%)
Strand=Plus/Plus
Query 1 CAATCTCTATCACACT-TACTATGGATCTTGTTGAGAGTTTTGGCCATGGCGATCCTGAT 59
||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 96 CAATCTCTATCACTCTCTACTATGGATCTTGTTGAGAGTTTTTCCCATGGCGATCCTGAT 155
Query 60 ACGCCGCGTTTCAGTGACGACTTTGGTTCTGGCTCTGCTTGCTCGACTCCGTTTGTTAGT 119
|| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 156 ACTCCGCGTTTCAGTGACGACTTCGGTTCTGGCTCTGCTTGCTCTACTCCGTTCGTTAGC 215
Query 120 GCTCCTTCTAGTCCCGGTCGTGGTCCTCCGCCGGGTTATTTCTTCAGTGCACCGTCGAGT 179
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 216 GCTCCGTCTAGTCCCGGCCGTGGTCCTCCGCCTGGTTATTTCTTCAGTGCACCGTCGAGT 275
Query 180 CCGATGCATTTCTTCCTTTGCTCTGCCTCTTCTTCATCTGAGAATCAGAAAAAGCTCGAG 239
|||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||
Sbjct 276 CCGATGCATTTCTTCCTTTGCTCTGCTTCTTCTTCATCGGAGAATCCTAAAAAGCTTGAC 335
Query 240 TCCTCGTCATGCGGCGACTTTGAGTTTGATTTCTCGTCGAGGTTGTCTTCGAGCAGTGGT 299
| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 336 ACGTCTTCATGCGGCGACTTTGAGTTTGACTTCTCGTCGAGGTTGTCTTCAAGCAGTGGT 395
Query 300 CCTTTAGGCGGCGTTTCCATGACTTCAGCTGAAGAGCTTTTCTCTAATGGCCAGATCAAG 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CCTTTAGGCGGTGTTTCCATGACTTCAGCTGAAGAGCTTTTCTCTAATGGCCAGATCAAG 455
Query 360 CCGATGAAGCTCTCTTCGCATCTTCAGAGACCTCAGATCTTATCTCCGCTTCTAGATCTG 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CCAATGAAGCTCTCTTCGCATCTTCAGAGACCTCAGATCTTATCTCCGCTTCTAGATCTG 515
Query 420 GAGAACGAGGAAGAAGACGACGAAGACGATGAGACCAAACCAAACGGTGAGATGGTTAAA 479
||||||||||||||||||||| || |||||||||||||||||||||||||| | ||
Sbjct 516 GAGAACGAGGAAGAAGACGAC---GATGATGAGACCAAACCAAACGGTGAGAT-G--AAG 569
Query 480 CGTGGGAGAGATCTGAAACTAAGAAGCAGATCTGTTCACCGGAAAGCCAGATCTCTCTCT 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 570 CGTGGGAGAGATCTGAAACTAAGAAGCAGATCTGTTCACCGGAAGGCCAGATCCCTCTCT 629
Query 540 CCGCTCAGAAACGCAGCGTATCAATGGAACCaagaag-a--ag-ag--gaagaagtcgcc 593
|||||| |||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 630 CCGCTCCGAAACGCAGCGTATCAATGGAACCAAGAAGAAGGAGAAGAAGAAGAAGTCGCC 689
Query 594 ggagagagagaagtgaaggagtgtataaggaagcttcaagaagaCGAAAACGTGCCGTCA 653
|||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 690 GGAGAGAGAGAAGTTAAAGAGTGTATAAGAAAGCTTCAAGAAGACGAAAACGTGCCTTCA 749
Query 654 GCTGAAACGACACCGTCTTGTTCTGCTTCTTCTTCACGATCATCTTCTTACGGTAGAAAC 713
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 750 GCTGAAACGACACCGTCTTGTTCTGCTTCTTCTTCACGATCATCGTCTTACGGTAGAAAC 809
Query 714 TCTAAGAAATGGATCTTTCTTAAAGATCTGCTTCACAGAAGCAAAAGCGAAGGAAGAGGC 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TCTAAGAAATGGATCTTTCTTAAAGATCTGCTTCACAGAAGCAAAAGCGAAGGAAGAGGC 869
Query 774 AACGGTAAAGAGAAGTTCTGGTCCAACATTTCATTCTCTCCTTCTAATTTCAAAGACAAG 833
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 870 AACGGGAAAGAGAAGTTCTGGTCCAACATTTCCTTCTCTCCTTCCAATTTCAAAGACAAG 929
Query 834 AAACTCAAATCTTCTCAACCTGAAGAGAAACCGATTCAAGAAACAGTTGAAGCTGCCGTG 893
||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 930 AAACTCAAATCATCTCAACTTGAAGAGAAACCGATTCAAGAAACAGTTGACGCTGCCGTG 989
Query 894 GAATCCAAGAAGAAGAAGCAGAAACAACCGCCGGCGAAGAAAGCTCCGGTCACCGGAAAA 953
||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 990 GAATCAAAGAAGCAGAAGCAGAAACAACCGCCGGCGAAGAAAGCTCCGGTTAACGGAAAA 1049
Query 954 CCAACAAACGGGATCGCGAAACGGAGAGGGTTGCAGCCGTCTGCTCACGAGCTGCATTAC 1013
||||| |||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1050 CCAACCAACGGGATAGCAAAACGGAGAGGATTGCAGCCGTCTGCTCACGAGCTACATTAC 1109
Query 1014 ACGACGAACAGAGCTCAAGCAGAGGAGATGAAGAAGAGAACATATTTGCCTTACAGGCAT 1073
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1110 ACAACGAACAGAGCTCAAGCAGAGGAAATGAAGAAGAGAACATATTTGCCTTACAGGCAT 1169
Query 1074 GGACTCTTTGGCTGTTTAGGGTTTAGTTCCAAAGGTTACAGTGCCTTGAACGGTTTAGCC 1133
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 GGACTCTTTGGTTGTTTAGGGTTTAGTTCCAAAGGTTACAGTGCCTTGAACGGTTTAGCC 1229
Query 1134 CGTAGCTTAAACCCAGTTTCCTCCGGTTAAGTTATAGATTAAGCCAATGT 1183
|||||||||||||||||||| || |||||| | ||||||||||| |||||
Sbjct 1230 CGTAGCTTAAACCCAGTTTCATCTGGTTAAATCATAGATTAAGCAAATGT 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5