BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939353

Length=283
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31990.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   270    4e-72


> AT1G31990.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11488016-11489287 
FORWARD LENGTH=1272
Length=1272

 Score =  270 bits (146),  Expect = 4e-72
 Identities = 229/268 (85%), Gaps = 9/268 (3%)
 Strand=Plus/Plus

Query  19   ACATGAGTCATGTTACG-AAGGCAAAGACCTTGAAGATAGACCAGATGCCTCGTCGGTAT  77
            ||| ||||||||||  | |||||| |  |||||||||| ||||| |||||||||||||||
Sbjct  330  ACA-GAGTCATGTT-GGAAAGGCACATCCCTTGAAGATGGACCAAATGCCTCGTCGGTAT  387

Query  78   CGCAACCATCGaaaaaaaCTCAGTCTTGCTAGATCTGA-TACTCTCTCTTCCATAATTAT  136
            ||||||| |||||||| |||| | ||||||| |  | | |||||||||||||||||||||
Sbjct  388  CGCAACCGTCGAAAAACACTCCGCCTTGCTACAAAT-ACTACTCTCTCTTCCATAATTAT  446

Query  137  GCGATTTTGTTGG-TCCCCAATAGCCATCCATCTCTCTCTTTTAGAGCGTTTTCCCGGCG  195
            ||||||||||||| ||| |  |||||||| |||||||| | | |||||||||| ||| ||
Sbjct  447  GCGATTTTGTTGGCTCCTCG-TAGCCATCTATCTCTCT-TGT-AGAGCGTTTTTCCGACG  503

Query  196  TTCACTATTGTGTTATTGTCGGCGTTTTATCTCCGATTGCGTTTCATCTTCTTCTTGTAG  255
            | ||||| ||||||||||||||||||   |||||||||||||| ||||||||||||||| 
Sbjct  504  TCCACTACTGTGTTATTGTCGGCGTTCCGTCTCCGATTGCGTTCCATCTTCTTCTTGTAA  563

Query  256  CCAAGTAGTCATCATTGGCCCACGAATG  283
            |||| |||| |||||||| |||| ||||
Sbjct  564  CCAATTAGTGATCATTGGTCCACAAATG  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13019346991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5