BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939357
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62690.1 | Symbols: ATL5 | AtL5 | chr3:23185348-23186701 REV... 1205 0.0
> AT3G62690.1 | Symbols: ATL5 | AtL5 | chr3:23185348-23186701 REVERSE
LENGTH=1354
Length=1354
Score = 1205 bits (652), Expect = 0.0
Identities = 761/815 (93%), Gaps = 2/815 (0%)
Strand=Plus/Plus
Query 5 TCTCTATCTATCTTCAAAACAATGGGAAACATGTTTGACAGTAGCAAGACGATATGGGGA 64
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 79 TCTCTATCTATCTTCAAAACAATGGGAAACCTGTTTGACAGTAGCAAGACTTTATGGGGA 138
Query 65 AACATGAACCATGGATCGTCACGTTACTCTCTCAACGGCAAAATCATGCTTGCTTCCGTC 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 139 AACATGAACCATGGATCGTCACGTTACTCTCTAAACGGCAAAATCATGCTTGCTTCCGTC 198
Query 125 ATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCCAGATGGTTG 184
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 199 ATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCTAGATGGTTA 258
Query 185 TTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTTGCC 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 259 TTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTCGCC 318
Query 245 GCCGCTCGAGACCCCACTCAATCTTCCTCATCTCTATCTCCTCTTGATCCGACGGTGCTC 304
|||||| |||||||||| ||||| || || || || ||||||||||||||||||||||||
Sbjct 319 GCCGCTAGAGACCCCACCCAATCATCATCCTCCCTCTCTCCTCTTGATCCGACGGTGCTC 378
Query 305 GAGAAGATCCCGATCTTCGTCTACTCCGCTAAAACCCATGAATCTCCACTGGAGGAGTGC 364
||||||||||| |||||||||||||||| |||||||||||||||||| || ||||| |||
Sbjct 379 GAGAAGATCCCTATCTTCGTCTACTCCGTTAAAACCCATGAATCTCCGCTTGAGGAATGC 438
Query 365 TCTGTTTGCTTATCGGAGTTTGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGC 424
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 439 TCTGTTTGCTTGTCGGAATTCGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGC 498
Query 425 CACGTGTTCCACGTTGATTGTATCGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTT 484
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 499 CACGTGTTCCATGTCGATTGTATAGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTT 558
Query 485 TGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAATCCGAACCGGTTGCTGCCGTG 544
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 559 TGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAACCCGAACCGGTTGCTGCTGTG 618
Query 545 TTCCCATCGGTTAAACCAGTTGAAGATACCGAAGCCGGAAGTTCTTCATCATCGGACGAA 604
|| ||||||||||||||| |||| |||||||||||||||||||| || ||||||||||||
Sbjct 619 TTTCCATCGGTTAAACCAATTGAGGATACCGAAGCCGGAAGTTCCTCTTCATCGGACGAA 678
Query 605 TCCGAATCCTCGACGCCGTCTTCCTCCTCTGGGTCGCCGGTTAGGTTTCCGATGGAAGCT 664
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 679 TCCGAATCCTCGACGCCGTCTTCCTCCTCTGGTTCGCCGGTGAGGTTTCCGATGGAAGCT 738
Query 665 TGTGAGAGAGCACCGATTGATTTAATCCATATAATTGTGGAGATCCCCAGGGCATTTGAA 724
|||||||||| ||||||||||||| || ||| ||||||||||| ||||||| |||| ||
Sbjct 739 TGTGAGAGAGAACCGATTGATTTAGTCGGTATCATTGTGGAGATTCCCAGGGAATTTCAA 798
Query 725 GATTCTAATTCGGGTCTACCCGGAGATAACGGGTCGAATAACCGGACTTCATT-ACAAAG 783
||||||||||||| |||||||| |||||||||||||||| ||| |||| || | ||||
Sbjct 799 GATTCTAATTCGGATCTACCCGCAGATAACGGGTCGAATCGTCGGGCTTCGTTGA-AAAG 857
Query 784 GCTATGGAGTATTTGATTACAAAATTGGATAGTGA 818
|||||||| |||||||| ||| |||||||||||||
Sbjct 858 GCTATGGATTATTTGATCACATAATTGGATAGTGA 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5