BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939360
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62720.1 | Symbols: ATXT1, XT1, XXT1 | xylosyltransferase 1 ... 2311 0.0
AT4G02500.1 | Symbols: ATXT2, XXT2, XT2 | UDP-xylosyltransferas... 869 0.0
> AT3G62720.1 | Symbols: ATXT1, XT1, XXT1 | xylosyltransferase
1 | chr3:23201117-23202907 FORWARD LENGTH=1791
Length=1791
Score = 2311 bits (1251), Expect = 0.0
Identities = 1361/1413 (96%), Gaps = 12/1413 (1%)
Strand=Plus/Plus
Query 18 gaagaTGATAGAGAAGTGTATAGGAGCGCATCGGTTTCGGAGATTACAGAGATTCTTGCG 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 206 GAAGATGATAGAGAAGTGTATAGGAGCGCATCGGTTTCGGAGATTACAGAGATTCATGCG 265
Query 78 TCAAGGAAAAGTGACGATTCTTTGCCTTGTTCTCACCGTCATCGTCTTACGTGGCACAAT 137
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 266 TCAAGGGAAAGTGACGATTCTTTGTCTCGTTCTCACCGTCATCGTCTTACGTGGCACAAT 325
Query 138 CGGAGCCGGTAAGTTTGGTACGCCGGAGAAAGATATCGAAGAGATCCGTGAGCATTTCTT 197
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 326 CGGAGCCGGTAAGTTTGGTACGCCGGAGAAAGATATCGAGGAGATCCGTGAGCATTTCTT 385
Query 198 CTACACGCGTAAACGCGGCGAGCCTCACCGTGTTCTCGTCGAGGTCTCTTCCAAAACGAC 257
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 386 CTACACGCGTAAACGCGGCGAGCCTCACCGTGTCCTCGTCGAGGTCTCTTCCAAAACGAC 445
Query 258 GTCATCCGAAGACGGAGATGCAAA---TGGTAACAGCTACGAGACCTTCGATATCAACAA 314
||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 446 GTCGTCCGAAGACGGAG--G-AAATGGTGGTAACAGCTACGAGACCTTCGATATCAACAA 502
Query 315 GCTATTCGTTGATGAAGGAGATGAAGAGAAATCTCAAGACCGGAC---TAAACCTTATTC 371
||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 503 GCTATTCGTTGATGAAGGAGACGAAGAGAAATCTCGAGACCGGACTAATAAACCTTATTC 562
Query 372 TCTCGGTCCCAAGATCTCTGATTGGGATGAGCAGAGACGTGATTGGCTCAAACAAAACCC 431
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 TCTTGGTCCCAAGATCTCTGATTGGGATGAGCAGAGACGTGATTGGCTCAAACAAAACCC 622
Query 432 TAATTTCTCTAATTTCGTGGCGCCAAAGAAGCCTAGGGTTCTTCTTGTCACAGGTTCAGC 491
|| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 623 TAGCTTCCCTAATTTCGTGGCGCCAAACAAGCCTAGGGTTCTTCTTGTCACAGGTTCAGC 682
Query 492 TCCTAAACCGTGTGAGAATCCAGTAGGAGACCATTACCTCTTGAAATCGATTAAGAACAA 551
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 683 TCCTAAACCGTGTGAGAATCCTGTAGGAGACCATTACCTCTTGAAATCGATTAAGAACAA 742
Query 552 AATCGATTACTGTAGGATTCACGGAATCGAGATCTTCTACAACATGGCGTTGCTCGATGC 611
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AATCGATTACTGTAGAATACACGGAATCGAGATCTTCTACAACATGGCGTTGCTCGATGC 802
Query 612 TGAGATGGCTGGATTCTGGGCCAAGCTTCCGTTGATTAGGAAGTTACTCTTGTCTCATCC 671
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 803 TGAGATGGCTGGATTCTGGGCTAAGCTTCCGTTGATTAGGAAGTTACTCTTGTCACATCC 862
Query 672 TGAGATTGAGTTTCTATGGTGGATGGATAGTGATGCCATGTTTACGGACATGGTGTTCGA 731
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 863 TGAGATTGAGTTTCTATGGTGGATGGATAGTGATGCCATGTTCACGGACATGGTGTTCGA 922
Query 732 GCTTCCATGGGAGAGGTATAAAGATTACAACTTGGTGATGCATGGTTGGAACGAGATGGT 791
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GCTTCCATGGGAGAGGTACAAAGATTACAACTTGGTGATGCATGGTTGGAACGAGATGGT 982
Query 792 TTATGACCAGAAGAATTGGATTGGTCTGAACACAGGAAGTTTCTTGCTTAGGAACTCACA 851
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 983 TTATGACCAGAAGAATTGGATTGGTCTCAACACGGGAAGTTTCTTGCTCAGGAACTCACA 1042
Query 852 GTGGTCGCTTGATCTTCTTGACGCTTGGGCTCCTATGGGTCCGAAAGGGAAGATCCGAGA 911
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1043 GTGGTCGCTTGATCTTCTTGACGCTTGGGCTCCTATGGGCCCAAAAGGGAAGATCCGAGA 1102
Query 912 AGAAGCGGGTAAAGTCTTGACCCGGGAACTTAAAGACCGACCGGCGTTCGAAGCTGACGA 971
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1103 AGAAGCGGGTAAAGTCTTGACCCGGGAACTTAAAGACCGACCCGCTTTCGAAGCTGACGA 1162
Query 972 TCAATCGGCGATGGTTTATCTTCTGGCGACGGAGAGAGAGAAGTGGGGAGGCAAAGTTTA 1031
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1163 TCAATCGGCGATGGTTTATCTGCTGGCGACGGAGAGAGAGAAATGGGGAGGCAAAGTTTA 1222
Query 1032 TCTAGAGAGTGGTTATTACTTGCACGGTTATTGGGGGATATTGGTAGACCGGTACGAGGA 1091
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1223 TCTAGAGAGTGGTTATTACTTGCACGGTTATTGGGGGATTTTGGTAGACCGGTACGAGGA 1282
Query 1092 AATGATTGAGAATCATAAACCGGGTTTTGGAGACCATCGGTGGCCACTGGTAACGCATTT 1151
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1283 GATGATTGAGAATCATAAACCGGGTTTTGGAGACCATCGGTGGCCATTGGTTACGCATTT 1342
Query 1152 CGTCGGGTGTAAACCGTGCGGGAAATTCGGAGATTATCCGGTGGAACGGTGTCTGCGGCA 1211
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1343 CGTCGGGTGTAAACCGTGCGGGAAATTTGGAGATTATCCGGTGGAACGGTGTCTACGGCA 1402
Query 1212 GATGGATAGAGCGTTTAATTTCGGAGACAATCAGATCCTTCAAATGTATGGTTTCACGCA 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 GATGGATAGAGCGTTTAATTTCGGAGACAATCAGATCCTTCAAATGTATGGTTTCACGCA 1462
Query 1272 TAAATCGCTTGGGAGCCGGCGCGTGAAACCCACGCGCAACCAGACGGATAGACCGCTCGA 1331
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1463 TAAATCGCTTGGGAGCCGGCGCGTGAAACCCACGCGCAATCAGACGGATAGGCCGCTCGA 1522
Query 1332 TGCCAAGGACGAGTTTGGGCTGCTTCATCCGCCGTTCAAAGCGGCCAAGCTTAGTACGAC 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 TGCCAAGGACGAGTTTGGGCTGCTTCATCCGCCGTTCAAAGCGGCCAAGCTTAGTACGAC 1582
Query 1392 GACGACGTGACTC-GTGAG-G-ATATATTGTTT 1421
|||||||||| | ||||| | |||||||||||
Sbjct 1583 GACGACGTGAGTGAGTGAGAGGATATATTGTTT 1615
> AT4G02500.1 | Symbols: ATXT2, XXT2, XT2 | UDP-xylosyltransferase
2 | chr4:1101507-1103610 FORWARD LENGTH=1782
Length=1782
Score = 869 bits (470), Expect = 0.0
Identities = 1042/1309 (80%), Gaps = 75/1309 (6%)
Strand=Plus/Plus
Query 10 aagaag-aagaagaTGATAGAGAAGTGTATAGGAGCGCATCGGTTTCGGAGATTACAGAG 68
|||||| ||||||||||| |||| |||| ||||||| | |||| |||||| | || ||
Sbjct 119 AAGAAGAAAGAAGATGATTGAGAGGTGTTTAGGAGCTTACCGGTGCCGGAGAATCCAAAG 178
Query 69 ATTC-TTGCGTCAAGGAAAAGTGACGATTCTTTGCCTTGTTCTCACCGTCATCGTCTTAC 127
| | || || ||| ||| || |||||||| || ||| |||| ||||| | ||| |||
Sbjct 179 A-GCTTTACGCCAATTAAAGGTAACGATTCTCTGTCTTCTTCTTACCGTTGTTGTCCTAC 237
Query 128 GTGGCACAATCGGAGCCGGTAAGTTTGGTACGCCGGAGAAAGATATCGAAGAGATCCGTG 187
|| |||||||||| |||||||| || || || |||||| ||||| | || |||||||||
Sbjct 238 GTAGCACAATCGGCGCCGGTAAATTCGGAACTCCGGAGCAAGATCTTGACGAGATCCGTC 297
Query 188 AGCATTTCTTCTACACGCGTAAACGCGGCGAGCCTCACCGTGTTCTCGTCGAGGTCTC-T 246
| |||||| | || | || ||||| || |||||||||||||| |||| || | ||
Sbjct 298 AACATTTC--C-ACGCACGCAAACGAGGTGAGCCTCACCGTGTCCTCGAAGAAAT-TCAG 353
Query 247 TCC--AAAACGA--CGTCATCCGAAGAC---GGA-G--ATGCAAAT--G-GTAACAGCTA 293
|| | | || | || |||| ||| ||| | || | | | |||| | |||
Sbjct 354 ACCGGAGGA-GATTCTTCTTCCGGTGACGGTGGAGGTAATTCCGGTGGGAGTAATAACTA 412
Query 294 CGAGACCTTCGATATCAACAAGCTATTCGTTGATGAAGGAGATGAAGAGAAATCTCAAGA 353
|||||| || || ||||||||| | |||||||| ||||| || ||||||||| | | ||
Sbjct 413 CGAGACGTTTGACATCAACAAGATTTTCGTTGACGAAGGTGAAGAAGAGAAA-C-C-CGA 469
Query 354 CCGGACTAAACCTTATTCTCTCGGTCCCAAGATCTCTGATTGGGATGAGCAGAGA-CGTG 412
|| || ||||||||| ||||||| |||||||| || |||||||||||||||||| | ||
Sbjct 470 CCCGAATAAACCTTACACTCTCGGACCCAAGATATCAGATTGGGATGAGCAGAGATC-TG 528
Query 413 ATTGGCTCAAAC-AA-AACCCTAATTTCTCTAATTTCGT-GGCGCCAAAGAAGCCTA-GG 468
||||| | | | || ||||||| ||| |||||||| | || || || ||||| | |
Sbjct 529 ATTGG-T-TAGCTAAGAACCCTAGCTTCCCTAATTTCATCGG-ACCTAACAAGCC-ACGT 584
Query 469 GTTCTTCTT-GTCACAGGTTCAGCTCCTAAACCGTGTGAGAATCCAGTAGGAGACCATTA 527
|||||| || || || ||||| || || ||||| ||||||||||| || || || |||||
Sbjct 585 GTTCTT-TTGGTGACTGGTTCGGCGCCAAAACCATGTGAGAATCCTGTCGGTGATCATTA 643
Query 528 CCTCTTGAAATCGATTAAGAACAAAATCGATTACTGTAGGATT-CACGGAATCGAGATCT 586
||||||||||||||| |||||||| ||||||||||||||| || || || ||||||||||
Sbjct 644 CCTCTTGAAATCGATCAAGAACAAGATCGATTACTGTAGG-TTACATGGGATCGAGATCT 702
Query 587 TCTACAACATGGCGT-TGCTCGATGCTGAGATGGCTGGATTCTGGGCCAAGCTTCCGTTG 645
||||||||||||| | | |||||||| ||||||||||| || ||||| |||||||| |||
Sbjct 703 TCTACAACATGGC-TCTTCTCGATGCAGAGATGGCTGGTTTTTGGGCAAAGCTTCCATTG 761
Query 646 ATTAGGAAG-TTACTCTTGTCTCATCCTGAGATTGAGTTTCTATGGTGGATGGATAGTGA 704
||||||||| || | ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 762 ATTAGGAAGCTT-TTGTTGTCACATCCTGAGATTGAGTTTCTTTGGTGGATGGATAGTGA 820
Query 705 TGCCATGTTTACGGACATGG-TGTTCGAGCTTCCATGGGAGAGGTATAAAGATTACAA-C 762
||| |||||||| || |||| | || |||||||||||||||||||||||||||||||| |
Sbjct 821 TGCTATGTTTACAGATATGGCT-TTTGAGCTTCCATGGGAGAGGTATAAAGATTACAATC 879
Query 763 TTGGTGATGCATGGTTGGAACGAGATGGTTTATGACCAGAAGAATTGGATTGG-TCTGAA 821
| |||||||||||| ||||| |||||||||||||| ||||||||||||||||| | ||||
Sbjct 880 T-GGTGATGCATGGATGGAATGAGATGGTTTATGATCAGAAGAATTGGATTGGGT-TGAA 937
Query 822 CACAGGAAGTTTCTTGCTTAGGAAC--TCACAGTGGTCGCTTGATCTT-CTTGACGCTTG 878
||||| |||||||||||||||||| ||| | ||| | |||||| || ||||| ||||
Sbjct 938 TACAGGGAGTTTCTTGCTTAGGAACAATCA-A-TGGGCACTTGAT-TTGCTTGATACTTG 994
Query 879 GGCTCCTATGGGTCCGAAAGGGAAGATCCGAGAAGAAGCGGGTAAAGTCTTGACCCGGGA 938
|||||| |||||||| |||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 995 GGCTCCCATGGGTCCTAAAGGGAAGATCCGTGAAGAAGCGGGTAAGGTTTTGACCCGTGA 1054
Query 939 ACTTAAAGACCGACCGGCGTTCGAAGCTGACGATCAATCGGCGATGGTTTATCT-TCTGG 997
|| || || |||||| |||||||||||| ||||| || || ||||||||||| | |||
Sbjct 1055 GCTCAAGGATAGACCGGTGTTCGAAGCTGATGATCAGTCTGCTATGGTTTATCTGT-TGG 1113
Query 998 CGACGGAGAGAGA-GAAGTGGGG-AGGCAAAGTTTATCTAGAGAGTGGTTATTA-CTTGC 1054
| || || |||| | ||||| | || || || ||||| ||||| || || ||| |
Sbjct 1114 CTACTCAGCGAGACGCT-TGGGGCAAT-AAGGTGTACCTAGAAAGTGGATACTATCTT-C 1170
Query 1055 ACGGTTATTGGGGGATA-TTGGTAGACCGGTACGAGGAAATGATTGAGAATCATAA-ACC 1112
||||||| |||||||| ||| | ||| | || || |||||||| || || | || |||
Sbjct 1171 ACGGTTACTGGGGGATTCTTG-TGGACAGATATGAAGAAATGATAGAAAA-C-TACCACC 1227
Query 1113 -GGGTTTTGGAGACCATCGG-TGGCCACTGGTAACGCA-TTTCGTCGGGTGTAAACCGTG 1169
|||| | ||||| || | | |||||| |||| || || ||| ||||| || ||||||||
Sbjct 1228 CGGGTCTAGGAGATCA-CAGATGGCCATTGGTGACTCACTTT-GTCGGTTGCAAACCGTG 1285
Query 1170 CGGGAAATTCGGAGATTATCCGGTGGAACGGTGTCTGCGGCAGATGGATAGAGCGTTTAA 1229
|||||||| || ||||| ||||||||||||||||| || ||||| ||||| |||||
Sbjct 1286 TGGGAAATTTGGTGATTACCCGGTGGAACGGTGTCTAAAACAAATGGACAGAGCCTTTAA 1345
Query 1230 -TTTCGGAGACAATCAGATCCTTCAAATGTATGGTTTCACGCATAAATC 1277
||| ||||| || ||||| || ||||| ||||||||||| || |||||
Sbjct 1346 CTTT-GGAGATAACCAGATTCTGCAAATCTATGGTTTCACTCACAAATC 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5