BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939371
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62820.1 | Symbols: | Plant invertase/pectin methylesterase... 957 0.0
> AT3G62820.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:23229749-23230501 FORWARD
LENGTH=753
Length=753
Score = 957 bits (518), Expect = 0.0
Identities = 585/618 (95%), Gaps = 2/618 (0%)
Strand=Plus/Plus
Query 9 TTCTTACAACCCATGAAAAAC-CTCATGAGTTCTTCCATCACATTTGCACTTGTCTTCTT 67
|||| |||| |||| ||||| | |||||||||||| ||||| |||||||| ||||||||
Sbjct 22 TTCTCACAAAACATG-AAAACTCCCATGAGTTCTTCTATCACGTTTGCACTCGTCTTCTT 80
Query 68 TCTCGTTTCTCTCAACCCAACATCATCATTACCGTCTAAACGCGAAAGCTACGTTCAAAA 127
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 81 TCTCCTTTCTCTCAACCCAACTTCATCATTACCGTCCAAACGCGAAAGCTACGTTCAAAA 140
Query 128 CGCGTGTAGTGTTACACGCTACCAAGATCTCTGCGCTAAAACGCTATCGCCTTTTGCATC 187
||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 141 CGCGTGTAGTGTTACACGCTACCAAGACCTCTGCGCTAAAACGCTATTGCCGTTTGCATC 200
Query 188 AGTCGCCAAGAACAGTCCCAGCAAATGGGCACGTGCCGGCGTTTCCGTTGCCATAACCGA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 AGTCGCCAAGAACAGTCCCAGCAAATGGGCACGTGCCGGCGTTTCCGTTGCCATAACCGA 260
Query 248 CAACAAAGACGTCCTTAGACACCTACTCAAAACGCGGCTTTCAACGATTGAGAAACGCGA 307
|||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||
Sbjct 261 CAACAAAGACGTCCTTAGACACCTTCTCAAAACGAGGCTTTCAACGATTGGGAAACGAGA 320
Query 308 CCGAATCGCTTTGTCGGATTGCCGAGAACTGCTCCAAGACTCTCTTGATAGTCTGCACAA 367
||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||
Sbjct 321 CCGAATCGCTTTGTCGGATTGTCGCGAACTTCTCCAAGACTCTCTTGATAGTCTCCACAA 380
Query 368 GTCCTTGGCCGTCCTTCGGACACTCAGCGCCAGCGAGTTTCAGCAGCAGATGAGTGATCT 427
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 381 GTCCTTGGCCGTCCTCCGGACACTCAGAGCCAGCGAGTTTCAGCAGCAGATGAGTGATCT 440
Query 428 TGCCACGTGGCTTAGCACTTCCCTCACGGACAAGGACACGTGTCTTGATGGGTTTGAAAA 487
||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 441 TGCTACGTGGCTTAGCTCTTCCCTCACTGACAAGGACACGTGTCTTGATGGGTTTGAAAA 500
Query 488 GACGTCCACGAGGTCATCATCAACGGTCAGGATGATTCGGAAGAGAGTCACGACGTCTTT 547
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 501 GACATCGACGAGGTCATCATCAACGGTCAGGATGATTCGGAAGAGAGTCACGACGTCTAT 560
Query 548 GTATTTGTCCAGCAATTCTCTCGCACTCCTCAACAAGCTAGCGGCTAATGGTTTGTAATC 607
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTACTTGTCCAGCAATTCTCTCGCACTCCTCAACAAGCTAGCGGCTAATGGTTTGTAATC 620
Query 608 TCTTAAATCATAAAATTT 625
|||||||||||||| |||
Sbjct 621 TCTTAAATCATAAACTTT 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5