BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939381
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21150.1 | Symbols: | Mitochondrial transcription terminati... 357 1e-97
> AT1G21150.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:7406296-7407764 REVERSE LENGTH=1469
Length=1469
Score = 357 bits (193), Expect = 1e-97
Identities = 715/957 (75%), Gaps = 76/957 (8%)
Strand=Plus/Plus
Query 110 ACCATGGTT-AAAGTCCTTTACTGTCTCATATCTCGTGAATTCGTGTGGGTTGTCTTTGG 168
|||||| || || || ||||| || || ||||||||| |||| ||||| |||||||||
Sbjct 339 ACCATGTTTGGAA-TCTTTTACAGTTTCTTATCTCGTGGATTCTTGTGGACTGTCTTTGG 397
Query 169 AATCTGCTAAGTCAAAGTCCAGATTCGT-AAAGTT-GTCATC-TTC-AGAAAGACCAGAC 224
|||||||||| || || ||||||||||| ||| || || || | | || || |||||||
Sbjct 398 AATCTGCTAAATCGAATTCCAGATTCGTCAAA-TTGGT-TTCGTCCAAG-AA-ACCAGAC 453
Query 225 TCTGTACTCACAT-TGC-TCAA-GAACAGTGGCTTCACCAATGAACAGATCATCAGGGTT 281
||||| || | | | | |||| || || ||||||||||||||| ||||||| ||| ||
Sbjct 454 TCTGTTCTTGC-TCT-CTTCAAGGACCA-TGGCTTCACCAATGACCAGATCACCAGTGTC 510
Query 282 GTCAAAT-CATTCC-CGACTATTCTGAT-TGTTAACCCAG-AGACTGTACTCTTACCAAA 337
|||||| | |||| || | ||||| | | | ||| | ||| |||| ||| || ||
Sbjct 511 ATCAAATCCTTTCCTCG--TGTTCTG-TCACTGAGCCCGGAAGA-TGTAATCTCGCCCAA 566
Query 338 GCTCATGTTTTTCCGATCAATCGGGTTATCGAGCTCTGATACTGCGAAACTCATCTCAAA 397
||||||||||||| | || |||||||| |||| ||| |||||||||||| | |||||
Sbjct 567 GCTCATGTTTTTCAGTTCTATCGGGTTTTCGACCTCGGATACTGCGAAAATGATCTCTTC 626
Query 398 TTGTCCC-ACAACGCTCTCCCT-TAGCTTGGC-TAACAGGCTGATTCCTTGCTATGATTC 454
|| ||| | || ||| | | | |||||| || || || |||| ||||||||||||||
Sbjct 627 TT-CCCCGAAAATGCTAT-CATATAGCTT-GCACAAAAGATTGATCCCTTGCTATGATTC 683
Query 455 CCTCAAGAGCATACTCGGCGAGCAAGAAAATGTCCTCAAATGTTTGA-GACGTGGATATT 513
||||||||||||||||| ||| |||||| ||| |||| ||| | | | |||||| ||
Sbjct 684 CCTCAAGAGCATACTCGTTGAGGAAGAAAGTGTTGTCAAGTGTCTCAAG-CGTGGA-ATC 741
Query 514 GGAT-TTTCACATTGGACACTGCAAAGTACT-TGGCTACA-CGGCTATCTC--TCTGTCG 568
||| |||| ||||| | | | || | | | || || | || | |||| | ||| |
Sbjct 742 AGATGTTTCTCATTGAAGATTACACATTG-TGTGTCT-CTTCG--TGTCTCCATTTGTAG 797
Query 569 AGATCTTGGAGT-CCGGGACCAAAGCATCAAAGCACT-GGTCCAAAACGG-TCCACTTGT 625
||| |||||||| || | || |||||||||| | | ||| ||| || |||| ||
Sbjct 798 AGAGCTTGGAGTTCCTG-ACAAAAGCATCAA-GTGGTTGGTTCAAG-CGTCTCCA-TTCA 853
Query 626 GTTCTT-CTGCTCC-GAGAGAA-AGTTCAACGAGGTCCTGAACAGAGTTTGCAACTTTGG 682
|| || || ||| ||||||| | |||||||||||| | ||||||||||||| || ||
Sbjct 854 CTTTTTTCT-CTCGTGAGAGAAGA-TTCAACGAGGTCTTAAACAGAGTTTGCAGCTACGG 911
Query 683 TTTTGACCCGAAAAAGATGTATTTCATTCATGCTATGTTAGT-TTTCTTT-CATGTTAGT 740
|||||||||||||||| | ||| |||| |||||| ||| ||| || || | |||
Sbjct 912 TTTTGACCCGAAAAAGGCGGGTTTTGTTCACGCTATGGTAGCCTTTGATTGCACG--AGT 969
Query 741 GAATTCA-CTGTGGAACACAAGTTTGGGCTGTACCAACAATATGGTTGGTCCAAAGACGA 799
|||| || | |||| | || ||| | ||| |||| | ||||||||| ||||| ||
Sbjct 970 GAAT-CAGCAATGGAGCGGAAATTTAAGTTGTTCCAATGTTTTGGTTGGTCTAAAGAAGA 1028
Query 800 TTGCGTGGCAGC-ATTCATGAGATTCCCAAACTGTGTGAAGATATCAGATGGGAAGATTA 858
|| ||| ||||| || ||||||||||||||||||||||| | | ||||||| |||||| |
Sbjct 1029 TTTCGTCGCAGCGAT-CATGAGATTCCCAAACTGTGTGACGGTTTCAGATGAGAAGATAA 1087
Query 859 CGGGA-ACCAT-GGATTACCTCGTAAACAATC-TGGGTCTCCCTCCTGGTGCCATTGCTA 915
| | || || ||| ||||| |||||||| | | ||||| | || ||| ||||| |
Sbjct 1088 TGT-ACAC-ATTGGAGTACCTTGTAAACAA-CATTGGTCTGCAAGCTCGTGACATTG-T- 1142
Query 916 TGCAA--CCTTTTGTTTTGGGTTTGAGCTTGGAGAAGAGAATCAAACCAAGGAACGTGGT 973
||||| || | || || | ||||| ||||||||||||||||||| |||||| |||
Sbjct 1143 TGCAAGACCGGTGGTGTTATCTCTGAGCATGGAGAAGAGAATCAAACCGAGGAACCAGGT 1202
Query 974 GATATCTGAGCTTCT-TGCTAAAGG-CTTGGTGAAGAAAGAAGATTTGAACTATTTC 1028
|| ||| |||||| | | ||||| |||| ||||||| ||||| | |||||||||
Sbjct 1203 CATCTCTTTGCTTCTCTCC-AAAGGACTTG-TGAAGAAGGAAGACATCAACTATTTC 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5