BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939382
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1 | ... 2235 0.0
> AT3G62910.1 | Symbols: APG3 | Peptide chain release factor 1
| chr3:23257554-23260427 REVERSE LENGTH=1417
Length=1417
Score = 2235 bits (1210), Expect = 0.0
Identities = 1250/1270 (98%), Gaps = 0/1270 (0%)
Strand=Plus/Plus
Query 4 CTCTCTAGACTCTAGACAATGAATAGCTCGATGACTACGAGTCCAACGGCTCGAGCCTTC 63
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 24 CTCTCTAGAGTCTAGACAATGAATAGCTCGATGACGACGAGTCCAACGGCTCGAGCCTTC 83
Query 64 CTTCATCTTCACTCGTCACCATTCACTTTACGTTCTAGGCAGCCACCGGCTGGAGTATGT 123
||||||||||||||||||||||||||||||||||| || || ||||| ||||||| |||
Sbjct 84 CTTCATCTTCACTCGTCACCATTCACTTTACGTTCGAGAAAGTCACCGTCTGGAGTTTGT 143
Query 124 CTAGTCTCGTGGCCGCCTTCTCCGTCTCGCAGGACTCGACGACTCGTCTGTATGGCCGAA 183
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 144 CTAGTCTCGTGGCCGCCTTCTCGGTCTCGCAGGACTCGACGACTCGTTTGTATGGCCGAA 203
Query 184 CCTTACCTCATTAGGAAAATGGAGTCTGTGGAGAAGACATGGAAGGAGTTATCGGTAAAA 243
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 204 CCTTACCTCATTAGGAAAATGGAGTCTGTTGAGAAGACATGGAAGGAGTTATCGGTGAAA 263
Query 244 CTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATG 323
Query 304 TCGGAGCTTGACGAGGTTGTAACAGTCTTCAGAAGATTCAAGGACTGTGAGAAGCAGTTA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCGGAGCTTGACGAGGTTGTAACAGTCTTCAGAAGATTCAAGGACTGTGAGAAGCAGTTA 383
Query 364 CTAGAAAGCAAAGTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CTAGAAAGCAAAGTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATA 443
Query 424 GGAAGTGAAATCAACTCGCTCACTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGGTG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GGAAGTGAAATCAACTCGCTCACTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGGTG 503
Query 484 TTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTCGAAGTTAGAGCAGGA 543
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 504 TTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTTGAAGTTAGAGCAGGA 563
Query 544 ACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTGTGCGGATGTATCAGAGGTAC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 ACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTGTGCGGATGTATCAGAGGTAC 623
Query 604 AGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGGCTGAACATGGTGGT 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 624 AGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGGCTGAACATGGAGGT 683
Query 664 TACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTACGAA 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 684 TACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTATGAA 743
Query 724 TCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACAGAAACACAGGGTCGTGTACACACT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 TCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACAGAAACACAGGGTCGTGTACACACT 803
Query 784 TCTACAGCAACTGTAGCCATCATGCCAGAGGCTGATGAAGTGGAAGTGGTGATTGACCCA 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TCTACAGCAACTGTAGCCATCATGCCAGAGGCTGATGAAGTGGAAGTGGTGATTGACCCA 863
Query 844 AAGGATATTGAACTTACATCTGCAAGATCTGGCGGCGCTGGAGGGCAAAATGTGAACAAG 903
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 864 AAGGACATTGAACTTACATCTGCAAGATCTGGCGGCGCTGGAGGCCAAAATGTGAACAAG 923
Query 904 GTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAA 983
Query 964 GAAAGGACTCAGATTAGGAATAAGGCTCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAT 1023
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 984 GAAAGGACCCAGATTAGGAATAAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAT 1043
Query 1024 GAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGGTTGGG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGGTTGGG 1103
Query 1084 ACTGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGGACAGTAGAGTGACTGAT 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 ACTGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGGACAGTAGAGTGACTGAT 1163
Query 1144 CATAGGCTAAAGATGAACTTTGCGCTTACATCATTTCTTGACGGTGCTTTAGAGGACGCA 1203
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1164 CATAGGCTAAAGATGAACTTTGCGCTTACAACATTTCTTGACGGTGCTTTAGAGGACGCA 1223
Query 1204 GTGCAGGCTTGTGCTGCTTTGGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTA 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 GTGCAGGCTTGTGCTGCTTTGGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTA 1283
Query 1264 GCTGCTTCTT 1273
||||||||||
Sbjct 1284 GCTGCTTCTT 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5