BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939384

Length=349
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62930.1 | Symbols:  | Thioredoxin superfamily protein | chr...   536    5e-152


> AT3G62930.1 | Symbols:  | Thioredoxin superfamily protein | chr3:23261442-23261927 
REVERSE LENGTH=486
Length=486

 Score =  536 bits (290),  Expect = 5e-152
 Identities = 325/342 (95%), Gaps = 2/342 (1%)
 Strand=Plus/Plus

Query  6    TTTATATACATCA-AAATGGAAAGCGTTGGAAGTTTAGTTGCAGACAAACCAGTGGTGAT  64
            ||||||||||| | |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  67   TTTATATACAT-AGAAATGGAAAGCGTTAGAAGTTTAGTTGAAGACAAACCAGTGGTGAT  125

Query  65   ATTCAGCAAAAGCTCTTGCTGCATGAGTCACTCAATTCAAACACTGATCTCAGGGTTTGG  124
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  126  ATTCAGCAAAAGCTCTTGCTGCATGAGCCACTCAATTCAAACACTGATCTCAGGGTTTGG  185

Query  125  GGCGAAGATGACAGTCTACGAGCTAGACCAATTCTCAAACGGTCAGGAGATCGAGAAGGC  184
            ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  186  GGCAAAGATGACGGTCTACGAGCTAGACCAATTCTCAAACGGTCAGGAGATCGAGAAGGC  245

Query  185  ATTGGTACAGATGGGGTGTAAGCCAAGTGTACCAGCTGTGTTCATAGGGCAACAGTTAAT  244
            ||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct  246  ATTGGTACAGATGGGGTGTAAACCCAGTGTACCAGCTGTGTTCATAGGGCAACAATTCAT  305

Query  245  CGGTGGTGCTAACCAGGTAATGACTCTCCAGGTGAAGAACCAACTAGCCGCGTTGCTAAG  304
            ||||||||||||||| ||||||||||| ||||| |||||||| ||||||||  |||||||
Sbjct  306  CGGTGGTGCTAACCAAGTAATGACTCTTCAGGTCAAGAACCAGCTAGCCGCAATGCTAAG  365

Query  305  AAGAGCCGGAGCCATATGGGTGTAACAGAAGACAAGAGAGTC  346
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  366  AAGAGCCGGAGCCATATGGGTGTAACAGAAGACAAGAGAGTC  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16337018425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5