BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939386

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62950.1 | Symbols:  | Thioredoxin superfamily protein | chr...   593    3e-169


> AT3G62950.1 | Symbols:  | Thioredoxin superfamily protein | chr3:23266249-23266934 
FORWARD LENGTH=686
Length=686

 Score =  593 bits (321),  Expect = 3e-169
 Identities = 343/354 (97%), Gaps = 0/354 (0%)
 Strand=Plus/Plus

Query  2    AACTTTCTTGATCATCGCAAATGGAGAGAATAAGAGATTTGTCGTCGAAGAAAGCGGCGG  61
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  35   AACTTTCTTGACCATCGCAAATGGAGAGAATAAGAGATTTGTCGTCGAAGAAAGCGGCGG  94

Query  62   TGATATTCACAAAGAGCTCATGTTGCATGTGCCATAGCATCAAGACGCTATTCTACGAAC  121
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  95   TGATATTCACAAAGAGCTCATGTTGTATGTGCCATAGCATCAAGACGCTATTCTACGAAC  154

Query  122  TAGGCGCTAGTCCGGCAATCCACGAGCTCGACAAAGACCCCGAAGGCCGCGAAATGGAGC  181
            |||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
Sbjct  155  TAGGCGCTAGTCCGGCGATCCATGAGCTCGACAAAGACCCTGAAGGCCGTGAAATGGAAC  214

Query  182  GAGCCCTACGTGCCCTTGGCTCATCGAACCCGGCGGTTCCAGCTGTTTTCGTTGGAGGAA  241
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  215  GGGCCCTACGTGCCCTCGGCTCATCGAACCCGGCGGTTCCAGCTGTTTTCGTTGGAGGAA  274

Query  242  GGTACATCGGATCAGCCAAAGACATCATCTCATTCCACGTCGACGGGTCGCTCAAGCAGA  301
            |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  275  GGTACATCGGATCAGCCAAAGACATCATCTCATTCCACGTGGACGGGTCACTCAAGCAGA  334

Query  302  TGCTTAAAGACGCTAAGGCCATTTGGTTATAGCGTCCGATCATCGTACATGTAT  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  335  TGCTTAAAGACGCTAAGGCCATTTGGTTATAGCGTCCGATCATCGTACATGTAT  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16638624919


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5