BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939388
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62970.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 1345 0.0
> AT3G62970.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:23270633-23272923 FORWARD LENGTH=1092
Length=1092
Score = 1345 bits (728), Expect = 0.0
Identities = 831/879 (95%), Gaps = 13/879 (1%)
Strand=Plus/Plus
Query 38 AGTGCTAATCACCAGTCAGACTCGAT----G--G-A--AGCAGCAGATTCTTCGATTCCC 88
||||||| || ||||||||||||||| | | | ||||||||||||||||||||||
Sbjct 13 AGTGCTAGTCTCCAGTCAGACTCGATGGAAGCAGCAGCAGCAGCAGATTCTTCGATTCCC 72
Query 89 AGAGTCAAAGACTTTGGCAAATTCCAATTCGGATGCGAGCACTACAAGAGACGATGTAAA 148
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 AGAGACAAAGACTTTGGCAAATTCCAATTCGGATGCGAGCACTACAAGAGACGATGTAAA 132
Query 149 ATCAGAGCTCCTTGCTGCAATCTCATCTTCCCATGCCGCCACTGCCACAACGACGCTGCG 208
|||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||
Sbjct 133 ATCAGAGCTCCTTGCTGCAATCTCATCTTCTCATGCCGCCATTGCCACAACGACTCTGCG 192
Query 209 AATTCTTTATC-TGACCCTAAAGAACGACATGATTTGGTCCGCCAAAACGTCAAACAGGT 267
|||||| | || ||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 193 AATTCTCT-TCCTGATCCTAAAGAACGTCATGATTTGGTCCGCCAAAACGTCAAACAGGT 251
Query 268 TGTTTGTTCAATATGTCAAACTGAGCAAGAGGTTGCCCAAGTCTGCTCGAATTGTGGCGT 327
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 252 TGTTTGTTCAATTTGTCAAACTGAGCAAGAGGTTGCTAAAGTCTGCTCGAATTGTGGCGT 311
Query 328 CAATATGGGGGAATACTTTTGCGATATCTGCAAATTCTTTGACGACGATACCTCGAAAGC 387
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 312 CAATATGGGAGAATACTTTTGCGATATCTGCAAATTCTTTGACGACGATATTTCGAAAGA 371
Query 388 ACAGTTTCATTGTGATGACTGTGGAATTTGTAGAGTTGGTGGGCGTGACAAATTCTTTCA 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ACAGTTTCATTGTGATGACTGTGGAATTTGTAGAGTTGGTGGGCGTGACAAATTCTTTCA 431
Query 448 TTGCCAGAACTGTGGAGCTTGCTATGCAATGGGCTTGCGCGATAAACACTCGTGCATTGA 507
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 432 TTGCCAGAACTGTGGAGCTTGCTACGGAATGGGCTTGCGCGATAAACACTCGTGCATTGA 491
Query 508 GAACTCCACAAAAAATTCTTGTCCTGTTTGTTATGAGTATCTATTTGATTCGGTAAAAGC 567
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 492 GAACTCTACAAAAAATTCTTGTCCTGTCTGTTATGAGTATCTATTTGATTCGGTAAAGGC 551
Query 568 CGCACATGTGATGAAATGTGGTCATACTATGCATATTGATTGCTTCGAACAAATGATCAA 627
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 552 CGCACATGTGATGAAATGTGGTCATACAATGCATATGGATTGCTTTGAACAAATGATCAA 611
Query 628 TGAAAACCAGTACCGATGCCCCATTTGTTCCAAGTCAATGTTGGATATGTCTCATTCGTG 687
||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||
Sbjct 612 TGAAAACCAGTACCGATGCCCAATTTGTGCCAAGTCAATGGTGGATATGTCTCCTTCGTG 671
Query 688 GCAATTATTAGATCTT-GAGATAAGCGCAACAGAGATGCCGGTTGAGTATAACTTTGAGG 746
||| |||||||| || ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 672 GCACCTATTAGAT-TTCGAGATAAGCGCAACAGAGATGCCTGTTGAGTACAAGTTTGAGG 730
Query 747 TTTCAATTCTCTGCAATGACTGCAACAAGGGGAGTAAAGCTATGTTCCACATTTTGGGAC 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TTTCAATTCTCTGCAATGACTGCAACAAGGGGAGTAAAGCTATGTTCCACATTTTGGGAC 790
Query 807 ACAAGTGCAGTGATTGTGGTTCATACAACACTCGGAGAATCTCAACGCCACAAGATCCAG 866
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ACAAGTGCAGTGATTGCGGTTCATACAACACTCGGAGAATCTCAACGCCACAAGATCCAG 850
Query 867 TGAGTGAAACAGAGTGATCATTTTCTGAAGCGAACTCTT 905
||||||||||||||||||||||||||||||| |||||||
Sbjct 851 TGAGTGAAACAGAGTGATCATTTTCTGAAGCCAACTCTT 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44206049360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5