BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939389
Length=1949
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protei... 3249 0.0
> AT3G62980.1 | Symbols: TIR1 | F-box/RNI-like superfamily protein
| chr3:23273116-23276375 REVERSE LENGTH=2342
Length=2342
Score = 3249 bits (1759), Expect = 0.0
Identities = 1887/1950 (97%), Gaps = 3/1950 (0%)
Strand=Plus/Plus
Query 1 TCTCGAGGTTATTTGGCCGCAATGCAGAAGCGAATAGCCTTGTCGTTTCCAGAAGAGGTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCTCGAGGTTATTTGGCCGCAATGCAGAAGCGAATAGCCTTGTCGTTTCCAGAAGAGGTA 233
Query 61 CTTGAGCATGTATTCTCGTTTATTCAGCAGGATAAGGATAGGAACTCGGTCTCTCTGGTG 120
|| |||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 234 CTAGAGCATGTGTTCTCGTTTATTCAGCTGGATAAGGATAGGAACTCAGTCTCTCTGGTG 293
Query 121 TGCAAGTCATGGTACGAGATCGAGCGTTGGTGCAGGAGGAAAGTCTTCATCGGGAACTGT 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 294 TGCAAGTCATGGTACGAGATCGAGCGGTGGTGCAGGAGGAAAGTCTTCATCGGGAACTGC 353
Query 181 TACGCCGTGAGTCCAGCGACGGTGATTAGGAGGTTCCCGAAAGTGAGATCCGTGGAGCTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TACGCCGTGAGTCCAGCGACGGTGATTAGGAGGTTCCCGAAAGTGAGATCCGTGGAGCTT 413
Query 241 AAGGGGAAACCTCACTTTGCTGACTTTAATTTGGTACCCGACGGATGGGGAGGTTACGTG 300
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 414 AAAGGAAAACCTCACTTTGCTGACTTTAATTTGGTACCTGACGGATGGGGAGGTTACGTG 473
Query 301 TATCCATGGATTGAGGCCATGTCGTCGTCTTACACGTGGCTTGAAGAGATAAGGCTGAAG 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 474 TATCCATGGATTGAGGCCATGTCTTCGTCTTACACGTGGCTTGAAGAGATAAGGCTGAAG 533
Query 361 AGGATGGTGGTGACCGACGATTGCTTGGAGCTCATAGCCAAGTCCTTTAAGAATTTCAAG 420
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 534 AGGATGGTGGTCACCGACGATTGCTTGGAGCTCATAGCCAAGTCTTTTAAGAATTTTAAG 593
Query 421 GTTCTTGTGCTTTCTTCCTGCGAAGGCTTCTCCACCGATGGTCTCGCTGCTATCGCTGCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTTCTTGTGCTTTCTTCCTGCGAAGGCTTCTCCACCGATGGTCTCGCTGCTATCGCTGCC 653
Query 481 ACTTGCAGGAATCTGAAAGAGCTTGATTTACGCGAGAGTGAGGTTGACGATGTTAGTGGC 540
|||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct 654 ACTTGCAGGAATCTGAAAGAGCTTGACTTACGAGAGAGTGATGTTGACGACGTTAGTGGC 713
Query 541 CATTGGCTTAGCCATTTCCCAGATACTTACACATCTTTGGTATCACTCAATATCTCTTGC 600
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 714 CACTGGCTTAGCCATTTCCCAGATACATACACTTCTTTGGTATCACTCAATATATCTTGC 773
Query 601 TTAGCATCTGAGGTCAGTTTTTCTGCTCTGGAAAGGCTGGTGACTAGGTGTCCCAATCTC 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTAGCATCTGAGGTCAGTTTCTCTGCTCTGGAAAGGCTGGTGACTAGGTGTCCCAATCTC 833
Query 661 AAGTCTCTCAAGCTTAACCGATCTGTTCCCCTTGAAAAATTGGCTACTTTAATTCAAAGA 720
||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 834 AAGTCTCTCAAGCTTAACCGAGCTGTTCCACTTGAAAAATTGGCTACTTTACTTCAAAGA 893
Query 721 GCTCCTCAATTGGAGGAATTGGGCACTGGTGGGTACACTGCAGAAGTCCGACCAGATGTT 780
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 894 GCACCTCAATTGGAGGAATTGGGCACTGGTGGGTACACTGCAGAAGTGCGACCAGATGTT 953
Query 781 TATTCTGGTTTATCTGTAGCGCTCTCTGGATGCAAGGATTTGAAGTGCTTATCTGGATTT 840
|| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 954 TACTCTGGTTTATCTGTAGCGCTCTCTGGGTGCAAGGAATTGAGGTGCTTATCTGGATTT 1013
Query 841 TGGGATGCTGTTCCTGCCTATCTTCCAGCTGTTTATTCAGTTTGCAGTCGGCTTACAACT 900
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1014 TGGGATGCTGTTCCTGCCTATCTTCCAGCAGTTTATTCGGTTTGCAGTCGGCTTACAACT 1073
Query 901 TTGAATCTGAGTTATGCAACAGTCCACAGCTATGATCTTGTCAAGCTACTTAGTCAATGC 960
|||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1074 TTGAATCTGAGTTATGCAACAGTCCAGAGCTATGATCTTGTCAAGCTTCTTTGTCAATGC 1133
Query 961 CCAAAACTGCAGCGCCTCTGGGTGCTTGACTACATTGAGGATGCTGGTCTTGAGGTGCTT 1020
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1134 CCTAAACTGCAGCGCCTCTGGGTGCTTGACTACATCGAGGATGCTGGTCTTGAGGTGCTT 1193
Query 1021 GCTTCAACCTGCAAGGACCTACGCGAGCTCAGAGTGTTTCCGTCTGAGCCTTTTGTCATG 1080
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1194 GCTTCAACCTGCAAGGACCTACGCGAGCTGAGAGTGTTTCCGTCCGAGCCTTTTGTCATG 1253
Query 1081 GAACCAAATGTGGCATTGACGGAACAGGGGCTTGTCTCCGTCTCCATGGGCTGTCCAAAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GAACCAAATGTGGCATTGACGGAACAGGGGCTTGTCTCCGTCTCCATGGGCTGTCCAAAA 1313
Query 1141 CTCGAGTCGGTTCTCTACTTCTGCCGTCAAATGACCAATGCTGCATTGATAACCATTGCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CTCGAGTCGGTTCTCTACTTCTGCCGTCAAATGACCAATGCTGCATTGATAACCATTGCT 1373
Query 1201 AGGAACCGTCCCAACATGACTCGCTTCCGCTTGTGCATCATTGAGCCAAAAGCTCCAGAC 1260
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1374 AGGAACCGTCCCAACATGACTCGCTTCCGTTTGTGCATCATTGAGCCAAAAGCCCCAGAC 1433
Query 1261 TATCTGACTCTAGAGCCACTGGATGTTGGATTTGGAGCCATAGTAGAGCACTGCAAAGAT 1320
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1434 TATCTGACTCTAGAGCCACTGGATATTGGATTTGGAGCCATAGTAGAGCACTGCAAGGAT 1493
Query 1321 CTCCGTCGCCTCTCTCTATCTGGCCTCTTGACCGACAAGGTTTTTGAATACATTGGGACA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CTCCGTCGCCTCTCTCTATCTGGCCTCTTGACCGACAAGGTTTTTGAATACATTGGGACA 1553
Query 1381 TATGCCAAGAAGATGGAAATGCTCTCAGTGGCATTTGCAGGAGACAGTGACTTAGGCATG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TATGCCAAGAAGATGGAAATGCTCTCAGTGGCATTTGCAGGAGACAGTGACTTAGGCATG 1613
Query 1441 CATCATGTTTTGTCGGGGTGCGATAGCCTGAGGAAACTAGAGATAAGGGACTGCCTGTTT 1500
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1614 CATCATGTTTTGTCCGGGTGCGATAGCTTGAGGAAACTAGAGATAAGGGACTGCCCGTTT 1673
Query 1501 GGAGACAAGGCGCTTTTGGCCAATGCTTCAAAGCTGGAGACAATGCGATCCCTTTGGATG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 GGAGACAAGGCGCTTTTGGCCAATGCTTCAAAGCTGGAGACAATGCGATCCCTTTGGATG 1733
Query 1561 TCTTCTTGTTCCGTGAGTTTTGGAGCCTGCAAGTTATTAGGACAGAAGATGCCAAAGCTG 1620
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1734 TCTTCTTGTTCCGTGAGTTTTGGAGCCTGCAAGTTACTAGGACAGAAGATGCCAAAGCTG 1793
Query 1621 AATGTGGAAGTCATCGATGAACGGGGTCCACCGGACTCGAGACCAGAGAGCTGCCCTGTG 1680
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1794 AATGTGGAAGTCATCGATGAACGGGGTGCACCGGACTCGAGACCAGAGAGCTGCCCTGTT 1853
Query 1681 GAGAGAGTGTTCATTTACCGAACAGTGGCAGGTCCTCGGTTTGACATGCCTGGCTTCGTC 1740
|||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1854 GAGAGAGTCTTCATATACCGAACAGTGGCTGGTCCTCGATTTGACATGCCTGGCTTCGTC 1913
Query 1741 TGGAACATGGACCAAGACTCAACAATGAGGTTT-CCAGGAAAATCATCACTACTAACGGA 1799
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 1914 TGGAACATGGACCAAGACTCAACAATGAGGTTTTCCAGGCAAATCATTACTACTAACGGA 1973
Query 1800 TTATAAGACAAATAAACGAGGTACATTTTTCATTAATCCTTGTTCATCATCCCATATAAT 1859
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 TTATAAGACAAAGAAACGAGGTACATTTTTCATTAATCCTTGTTCATCATCCCATATAAT 2033
Query 1860 CGTGTTCCGGTTTAGGAACATGAGAGAGCTCTCGGTCGCCAATAATTTGATTCTCGGCTG 1919
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2034 CGTGTTCCGGTTTAGGAACATGAGAGAGCTC--GGTCGCCAATAATTTGAATCTCGGCTG 2091
Query 1920 CTTCATATAACCATCAAGCTCATGAGCAAT 1949
||||||||||||||||||||||||||||||
Sbjct 2092 CTTCATATAACCATCAAGCTCATGAGCAAT 2121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96535648035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5