BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939394
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63030.1 | Symbols: MBD4 | methyl-CPG-binding domain 4 | chr... 717 0.0
> AT3G63030.1 | Symbols: MBD4 | methyl-CPG-binding domain 4 | chr3:23295343-23296597
FORWARD LENGTH=784
Length=784
Score = 717 bits (388), Expect = 0.0
Identities = 517/578 (89%), Gaps = 14/578 (2%)
Strand=Plus/Plus
Query 14 AAGTGAGATGGAGG--CA-GACGAGATCGCAAAACCAGCGAAACCAAAAGCCAAGAAAGA 70
|||||||||| ||| | || ||||||| ||||||||||||||||||||||||||||||
Sbjct 45 AAGTGAGATGAAGGAAGAGGAGGAGATCGGAAAACCAGCGAAACCAAAAGCCAAGAAAGA 104
Query 71 CACTGCGCCAGGGAGGTTGATCGATACCTATGCTGCACAATGCGAAAACTGTCACAAGTG 130
||| || ||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 105 TGTTGCTCCTGGGAGGTTGATTGATACCTATGCTGCACAGTGCGATAACTGTCACAAGTG 164
Query 131 GAGGGTGATTGATAGCCAAGAGGAGTATGAGGATATCAGAAGTAAAATGCTTGAGGACCC 190
|||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 165 GAGGGTGATTGATAGCCAGGAGGAATATGAAGATATCAGAAGTAAAATGCTCGAGGATCC 224
Query 191 TTTTAACTGTCAGAAGAAACAGGGCATGTCCTGTGAAGAGCCTGCTGATCTTGACTATGA 250
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 225 TTTTAACTGTCAGAAGAAACAGGGCATGTCTTGTGAAGAGCCTGCTGATATTGACTACGA 284
Query 251 TTCCTCAAGGACTTGGGTCATCGACAAGCCTGGTCTCCCCAAAACGCCTCAAGGTTTCAG 310
||| || ||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 285 TTCTTCTCGGACTTGGGTCATTGACAAGCCTGGTCTCCCCAAAACGCCTAAAGGTTTCAA 344
Query 311 GAGGAGCTTAGTCCTCAGGAAAGACTACTCTAAGATGGATACCTACTATTTTACTCCAAC 370
||| |||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 345 GAGAAGCTTAGTTCTCAGAAAAGATTACTCTAAGATGGATACCTACTACTTTACTCCTAC 404
Query 371 CGGGAAGAAGCTGAGGAGTCGCAATGAAATCGCAGCCTTTGTTGAAGCCAATCCGGAATT 430
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 405 CGGGAAGAAGCTCAGGAGTCGCAATGAAATCGCTGCCTTCGTTGAAGCCAATCCGGAATT 464
Query 431 CAAGAACGCACCCCTCGGAGACTTCAATTTTACTGTCCCCAAGGTCATGGAAGATACTGT 490
|| ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 465 CAGGAACGCACCACTTGGAGACTTCAATTTCACTGTCCCCAAGGTCATGGAAGATACTGT 524
Query 491 TCCTCCTGATCCTAAGCTTGCCTCTCCTATT--------T-CTACCACTACTACAGAGAA 541
||| |||||||| ||||||| ||||||| || | ||||||||||| |||||||
Sbjct 525 TCCCCCTGATCCGAAGCTTGGCTCTCCTTTTCCAAGCACTACTACCACTACTTCAGAGAA 584
Query 542 GAGCAGTTTCAAGCAGATCCA-AGGCTAATATGTTCTC 578
||||||| ||||||||| ||| | |||||||||||||
Sbjct 585 GAGCAGTGTCAAGCAGAGCCATAA-CTAATATGTTCTC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5