BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939397
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398... 183 8e-46
AT5G09585.1 | Symbols: U2.5 | U2.5; snRNA | chr5:2974555-297530... 182 3e-45
AT3G56825.1 | Symbols: U2.4 | U2.4; snRNA | chr3:21041727-21042... 180 1e-44
AT5G61455.1 | Symbols: U2.7 | U2.7; snRNA | chr5:24713264-24714... 178 4e-44
AT3G56705.1 | Symbols: U2.6 | U2.6; snRNA | chr3:21004259-21004... 178 4e-44
AT3G57645.1 | Symbols: U2.2 | U2.2; snRNA | chr3:21346342-21347... 174 5e-43
AT3G57770.1 | Symbols: | Protein kinase superfamily protein | ... 147 1e-34
AT1G16820.1 | Symbols: | vacuolar ATP synthase catalytic subun... 141 5e-33
> AT3G57765.1 | Symbols: U2.3 | U2.3; snRNA | chr3:21397262-21398132
REVERSE LENGTH=871
Length=871
Score = 183 bits (99), Expect = 8e-46
Identities = 125/137 (91%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGACCGATGACCCACATATCAGATATTAAACTGATAAGAACAG 60
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 614 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 555
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGATATGCAA-ATTGGGCTCG 119
||||||||||||||||||||||||||||||||||||||||||| || | || |||| |
Sbjct 554 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGATTTGGACGAT-GGGCG-G 497
Query 120 ACCT-CTGATTTATACT 135
| || || |||||||||
Sbjct 496 AGCTTCTTATTTATACT 480
> AT5G09585.1 | Symbols: U2.5 | U2.5; snRNA | chr5:2974555-2975306
FORWARD LENGTH=752
Length=752
Score = 182 bits (98), Expect = 3e-45
Identities = 104/107 (97%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGACCGATGACCCACATATCAGATATTAAACTGATAAGAACAG 60
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 557 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 498
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGATATGC 107
||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 497 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGATTTGC 451
> AT3G56825.1 | Symbols: U2.4 | U2.4; snRNA | chr3:21041727-21042609
REVERSE LENGTH=883
Length=883
Score = 180 bits (97), Expect = 1e-44
Identities = 113/120 (94%), Gaps = 4/120 (3%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGACCGATGACCCACATATCAGATATTAAACTGATAAGAACAG 60
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 694 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 635
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGATAT-GCA-AATTGGGCTC 118
|||||||||||||||||||||||||||||||||||||||||| || | | ||| ||||||
Sbjct 634 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGA-ATTGGACAAT-GGGCTC 577
> AT5G61455.1 | Symbols: U2.7 | U2.7; snRNA | chr5:24713264-24714094
REVERSE LENGTH=831
Length=831
Score = 178 bits (96), Expect = 4e-44
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGACCGATGACCCACATATCAGATATTAAACTGATAAGAACAG 60
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 591 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 532
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGA 490
> AT3G56705.1 | Symbols: U2.6 | U2.6; snRNA | chr3:21004259-21004809
FORWARD LENGTH=551
Length=551
Score = 178 bits (96), Expect = 4e-44
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGACCGATGACCCACATATCAGATATTAAACTGATAAGAACAG 60
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 334 TAGAGTTAATATCGTGTGGGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACAG 275
Query 61 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGA 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGA 233
> AT3G57645.1 | Symbols: U2.2 | U2.2; snRNA | chr3:21346342-21347204
FORWARD LENGTH=863
Length=863
Score = 174 bits (94), Expect = 5e-43
Identities = 101/104 (97%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 1 TAGAGTTAATATCGTGTGGA-CCGATGACCCACATATCAGATATTAAACTGATAAGAACA 59
||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 499 TAGAGTTAATATCGTGT-GAGCCGATGGCCCACATATCAGATATTAAACTGATAAGAACA 441
Query 60 GATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAT 103
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGAT 397
> AT3G57770.1 | Symbols: | Protein kinase superfamily protein
| chr3:21397542-21398853 FORWARD LENGTH=1242
Length=1242
Score = 147 bits (79), Expect = 1e-34
Identities = 103/114 (90%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 24 ATGACCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 83
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 84 AAGGCCGAGAAAGGTATGATATGCAA-ATTGGGCTCGACCT-CTGATTTATACT 135
|||||||||||||||||||| || | || |||| || || || |||||||||
Sbjct 61 AAGGCCGAGAAAGGTATGATTTGGACGAT-GGGCG-GAGCTTCTTATTTATACT 112
> AT1G16820.1 | Symbols: | vacuolar ATP synthase catalytic subunit-related
/ V-ATPase-related / vacuolar proton pump-related
| chr1:5756835-5758464 REVERSE LENGTH=646
Length=646
Score = 141 bits (76), Expect = 5e-33
Identities = 78/79 (99%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 24 ATGACCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 83
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 84 AAGGCCGAGAAAGGTATGA 102
|||||||||||||||||||
Sbjct 61 AAGGCCGAGAAAGGTATGA 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5