BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939402

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63088.1 | Symbols: RTFL14, DVL14 | ROTUNDIFOLIA like 14 | c...   244    2e-64


> AT3G63088.1 | Symbols: RTFL14, DVL14 | ROTUNDIFOLIA like 14 | 
chr3:23313053-23313199 FORWARD LENGTH=147
Length=147

 Score =  244 bits (132),  Expect = 2e-64
 Identities = 143/148 (97%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  89   ATGGCAGGGACAGTTGTGTTGAGATGCTGCAGTAGTGTTAA-CAAGGTTAGGACATGGAA  147
            |||||||||||||| || ||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct  1    ATGGCAGGGACAGTAGTATTGAGATGCTGCACTAGTG-TAACCAAGGTTAGGACATGGAA  59

Query  148  AAGATGTTCGAAGCAGATAAAGGAGCAAAGGGCTCGTCTTTACATCATCTGGAAATGTGC  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   AAGATGTTCGAAGCAGATAAAGGAGCAAAGGGCTCGTCTTTACATCATCTGGAAATGTGC  119

Query  208  TGTCTTTCTTCTCTCCTCCCATGATTGA  235
            ||||||||||||||||||||||||||||
Sbjct  120  TGTCTTTCTTCTCTCCTCCCATGATTGA  147



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5