BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939408
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63130.1 | Symbols: RANGAP1, ATRANGAP1 | RAN GTPase activati... 2543 0.0
> AT3G63130.1 | Symbols: RANGAP1, ATRANGAP1 | RAN GTPase activating
protein 1 | chr3:23324621-23326913 FORWARD LENGTH=2040
Length=2040
Score = 2543 bits (1377), Expect = 0.0
Identities = 1518/1587 (96%), Gaps = 6/1587 (0%)
Strand=Plus/Plus
Query 31 CACAGAACCGTGTTTTGTCAGTCAAGATGTGGCCACCGAGTAAGAGTACCCGCCTCATGC 90
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 257 CACAGAACCGTGTTTTGTCAGTGAAGATGTGGCCACCGAGTAAGAGTACCCGTCTCATGC 316
Query 91 TTGTTGAGCGGATGACCAAGAACATTACCACCCCTTCCATCTTCTCCAGGAAGTACGGTC 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TTGTTGAGCGGATGACCAAGAACATTACCACCCCTTCCATCTTCTCCAGGAAGTACGGTC 376
Query 151 TTTTGACTCTCCAAGAGGCTGAGCAAGACGCCAAGCGCATTGAAGACTTGGCTTTTGCTA 210
||||| || | |||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 377 TTTTGTCTGTTGAAGAGGCTGAGCAAGACGCCAAGCGCATTGAAGATTTGGCCTTTGCTA 436
Query 211 CTGCCAACAAACACTTCCAGAACGAGCCTGATGGTGATGGAACTTCTGCCGTTCAGGTCT 270
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 437 CTGCCAACAAACACTTCCAGAACGAGCCTGATGGTGATGGCACTTCTGCTGTTCACGTCT 496
Query 271 ATGCTAAAGAATCCAGTAAGCTCATGCTTGAAGTCATCAAACGAGGTCCCCAGGAAGAAT 330
|||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 497 ATGCTAAAGAATCCAGCAAGCTCATGCTTGATGTCATCAAACGTGGTCCACAGGAAGAAT 556
Query 331 CCGAGGTTGAGGTGAGCAAGGATGGGGATATCTTTTTTGATATATCTGGTGGGAGCAGAG 390
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 557 CCGAGGTTGAGGTGAGCAAGGATGGTGATGTCTTTTTTGATATATCTGGTGGGAGCAGAG 616
Query 391 CATTTATCGACGAAGAGGAGGCACGCCAGCTTTTGAGGCCTTTGGCTAG-GCCGCATAAC 449
| ||||| || ||||||||||||||| | |||||||||||| ||||| | |||| ||||
Sbjct 617 CTTTTATTGAAGAAGAGGAGGCACGCGACCTTTTGAGGCCTCTGGCT-GACCCGCGTAAC 675
Query 450 TCCT-TCACCAAAATCCGTTTTAGCAACAGGAGTTTTGGCTCTGAAGCTGCCAAATTTGC 508
|||| | |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 676 TCCTAT-ACCAAAATCCGTTTTAGCAACAGGAGTTTTGGGTCTGAAGCAGCCAAATTTGC 734
Query 509 TGCCAGCGTTTTGTCTTCCATCAAGGATCAGCTGACGGAAGTGGATCTCTCGGATTTTGT 568
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TGCGAGCGTTTTGTCTTCCATCAAGGATCAGCTGACGGAAGTGGATCTCTCGGATTTTGT 794
Query 569 TGCAGGCAGACCAGAGGCCGAAGCACTTGAAGTCATGAATATGTTTTCATCTGCTTTGGA 628
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 795 TGCAGGAAGACCAGAGGCTGAAGCGCTTGAAGTCATGAATATGTTTTCATCTGCTTTAGA 854
Query 629 GGGTTCTAAGCTGAGGTATCTGAATCTCTCGGACAATGCTTTGGGAGAAAAGGGAATTAG 688
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GGGTTCTAAGCTTAGGTATCTGAATCTCTCGGACAATGCTTTGGGAGAAAAGGGAATTAG 914
Query 689 GGCATTTGCTTCTCTCATCAAGTCTCAGAATGACTTGGAGGAGCTTTATCTGATGAATGA 748
||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 915 GGCATTTGCTTCTCTCATCAATTCTCAGCATGACTTGGAGGAGCTCTATCTGATGAATGA 974
Query 749 TGGCATTTCCGAGGATGCTGCACATGCAGTTCGTGAGCTACTTCCTTCTACTGGCAAAAT 808
||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||
Sbjct 975 TGGCATTTCCGAGGATGCTGCACGTGCAGTTCGTGAGCTTCTCCCTTCTACTGACAAAAT 1034
Query 809 CAGGGTTCTTCAGTTCCATAACAACATGACAGGAGATGAAGGAGCAATC-GCCATTGCAG 867
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1035 CAGGGTTCTTCAGTTTCATAACAACATGACAGGAGATGAAGGAGCAA-CTGCCATTGCAG 1093
Query 868 AGATTGTCAGGCAGTGTCCATCTTTGGAAGATTTCCGGTGTTCATCTACAAGGATTGGTT 927
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AGATTGTCAGGGAGTGTCCATCTTTGGAAGATTTCCGGTGTTCATCTACAAGGATTGGTT 1153
Query 928 CAGAAGGTGGTGTTGCGCTAGCTGAAGCACTTGAACACTGTAGCCACTTGAAGAAACTTG 987
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CAGAAGGTGGTGTTGCACTAGCTGAAGCACTTGAACACTGTAGCCACTTGAAGAAACTTG 1213
Query 988 ATCTTCGCGACAACATGTTTGGAGTCGAAGGTGGAATTGCCCTGGCCAAGACTTTATCAG 1047
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 ATCTTCGTGACAACATGTTTGGAGTCGAAGGTGGAATTGCCCTGGCCAAGACTTTATCAG 1273
Query 1048 TGTTGACTCATTTAACTGAGATCTATATGAGTTACCTGAACTTGGAGGATGAGGGAGCAG 1107
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1274 TCTTGACTCATTTAACCGAGATCTATATGAGTTACCTGAACTTGGAGGATGAGGGAACAG 1333
Query 1108 AGGCACTTTCTGAAGCTCTACTTAAGTCTGCCCCTTCTCTTGAAGTTCTAGAATTGGCTG 1167
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1334 AGGCACTTTCTGAAGCTCTACTTAAGTCCGCCCCTTCTCTTGAAGTTCTAGAATTGGCTG 1393
Query 1168 GGAACGATATTACTGTAAAATCCGCTGGAAATTTGGCAGCTTGCATTGCCTCCAAACAGT 1227
| ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1394 GTAACGACATTACTGTAAAATCCACTGGAAATTTGGCAGCTTGCATCGCCTCCAAACAGT 1453
Query 1228 CTCTTTCAAAGCTGAATTTATCTGAGAATGAACTCAAAGACGAAGGGACTATCTTAATTG 1287
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 CTCTTGCAAAGCTGAATTTATCTGAGAATGAACTCAAAGACGAAGGGACTATCTTAATTG 1513
Query 1288 CAAAGGCAGTTGAAGGTCATGATCAGTTAGTTGAAGTTGACCTGAGCACCAACATGATAA 1347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1514 CAAAGGCAGTTGAAGGTCATGATCAGTTAGTTGAAGTTGACCTGAGCACCAACATGATCA 1573
Query 1348 GAAGAGCTGGGGCAAGAGCCTTGGCACAAACTGTTGTGAAGAAACATACTTTCAAGCTTC 1407
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1574 GAAGAGCTGGGGCAAGGGCCTTGGCACAAACTGTTGTGAAGAAAAATACTTTCAAGCTTC 1633
Query 1408 TGAACATTAATGGAAACTTCATATCTGAGGAAGGTATTGACGAGGTAAATGACATGTTTA 1467
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 TGAACATCAATGGAAACTTCATATCTGAGGAAGGTATTGACGAGGTAAATGACATGTTTA 1693
Query 1468 AGGACTCTCTTGACAAGCTTGTTCCTTTGGATGACAATGACCCTGAAGGAGAAGATTTTG 1527
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1694 AGGACTGTCTGGACAAGCTTGTTCCTTTGGACGACAATGACCCTGAAGGAGAAGATTTTG 1753
Query 1528 AAGATGAAGACGAAGAGGAGGAAGGCGAAGATGACAATGAATTGGAATCAAAGCTTGGAG 1587
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1754 AAGATGAAGACGAAGAGGAGGAAGGCGAAGATGGCAATGAATTGGAATCAAAGCTTGGAA 1813
Query 1588 GTCTGAAAATCAAGCAAGAGGAGGAAT 1614
|||||||||||||||||| ||||||||
Sbjct 1814 GTCTGAAAATCAAGCAAGGGGAGGAAT 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80873077995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5