BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939416
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63200.1 | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 ... 1895 0.0
> AT3G63200.1 | Symbols: PLP9, PLA IIIB | PATATIN-like protein
9 | chr3:23345902-23347564 FORWARD LENGTH=1578
Length=1578
Score = 1895 bits (1026), Expect = 0.0
Identities = 1131/1183 (96%), Gaps = 2/1183 (0%)
Strand=Plus/Plus
Query 3 TAATTTTGtttttttCTTATGGAGATGGATCTCAGCAAGGTTACTCTTGACATTTTCACA 62
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TAATTTTGTTCTTTTCTTATGGAGATGGATCTCAGCAAGGTTACTCTTGACATTTTCACA 280
Query 63 AAGCTTGAACAGAAATGGCTCTCTCACTGCGACACCTCCAGGAAGACTCGTATCCTTAGC 122
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 281 AAGCTTGAACAGAAATGGCTCTCTCACTGCGACTCCTCCCGGAAGACTCGTATCCTTAGC 340
Query 123 ATCGACGGTGGCGGTACCACTGCCATTGTCGCCGCTGCTTTTATTCTCCACCTCGAACAC 182
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 341 ATCGACGGTGGCGGTACCACTGGCATTGTCGCCGCTGCTTCTATTCTCCACCTCGAGCAC 400
Query 183 CAGATCCGCCTTCTAACCGGTGACCCTCTCGCTCACATCTCTGATTTCTTCGACATTGTC 242
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 401 CAGATCCGCCTTCAAACCGGCGACCCTCACGCTCACATCTCTGATTTCTTCGACATTGTC 460
Query 243 GCCGGAACTGGCATCGGGGGCATTCTCGCCGCCCTCCTTGTTGCCGACGACGGCTCCGGC 302
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 461 GCCGGAACTGGCATCGGAGGCATTCTCGCCGCCCTCCTTGTCGCCGACGACGGCTCCGGC 520
Query 303 AGGCCGATGTTCACTGCCAGAGACGCGGTTCAGTTTGTCACGGAGAAGAACTCGGAGCTC 362
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 521 AGGCCGATGTTCACTGCCAGAGACGCGGTTAAGTTTGTCGCGGAGAAGAACTCGGAGCTC 580
Query 363 TTCGAGATCAGGTACACCGGCGTTTTCAGGAGGAACAAGAGGTACTCGGGGAAGAGCATG 422
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 581 TTCGAGATCAGGTACACCGGAGTTTTCAGGAGGAACAAGAGATACTCGGGGAAGAGCATG 640
Query 423 GAGAGGGTGTTGGAGGCTGCGTTTCGGAGGGAAGACGGTAAGGTGTTGACGATGAAGGAC 482
|||||||| |||||| | |||||| |||| || |||||||||||||||||||||||||||
Sbjct 641 GAGAGGGTTTTGGAGACGGCGTTTAGGAGAGAGGACGGTAAGGTGTTGACGATGAAGGAC 700
Query 483 ACGTGTAAGCCTCTCCTTGTTCCTTGCTACGACCTCAAAACCTCTGCTCCTTTCGTTTTC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 ACGTGTAAGCCTCTCCTTGTTCCTTGCTACGACCTCAAAACCTCTGCTCCTTTCGTTTTC 760
Query 543 TCACGCGCCGGCGCGTCTGAGTCCCCGAGCTTCGACTTCGAGCTGTGGAAAGTCTGCCGT 602
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 761 TCACGCGCCGGCGCGTCTGAGTCTCCGAGCTTCGACTTCGAGCTGTGGAAAGTCTGCCGT 820
Query 603 GCCACGTCGGCAACACCTAGCCTCTTCAAGCCGTTCAATGTGGTGTCGGTGGACGGGAAA 662
|||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 821 GCCACGTCAGCAACACCAAGCCTCTTCAAGCCGTTCAGTGTAGTGTCGGTGGACGGGAAA 880
Query 663 ACCTCATGCTCAGCCGTAGACGGCGGTTTGGTGATGAACAATCCAACAGCAGCTGCCGTG 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 ACCTCATGCTCAGCCGTAGACGGCGGTTTGGTGATGAACAATCCAACAGCAGCTGCCGTC 940
Query 723 ACGCACGTGCTCCACAACAAACGAGATTTCCCGTCAGTTAACGGCGTGGATGACTTGCTT 782
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 941 ACGCACGTGCTACACAACAAACGAGATTTCCCGTCAGTAAACGGCGTAGATGACTTGCTT 1000
Query 783 GTACTGTCGCTAGGGAA-CGGTTCATCGACCATGGCATCTTCACCAGGGAGGAAACTCCG 841
||||||||| | ||||| |||| | ||||||||| |||| ||||||||||||||||||||
Sbjct 1001 GTACTGTCGTT-GGGAAACGGTCCGTCGACCATGTCATCATCACCAGGGAGGAAACTCCG 1059
Query 842 TCGTAACGGAGACTGTTCAACGTCATGTGTGGTGGATATAGTGCTTGACGGCGTTTCCGA 901
|||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||||||
Sbjct 1060 TCGTAACGGAGACTATTCAACGTCAAGTGTGGTGGACATAGTGGTTGACGGCGTTTCCGA 1119
Query 902 TACCGTTGATCAGATGCTGGGGAACGCTTTCTGCTGGAACCGTACCGATTACGTTAGAAT 961
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1120 TACCGTCGATCAGATGCTGGGGAACGCTTTCTGCTGGAACCGTACTGATTACGTTAGAAT 1179
Query 962 CCAGGCGAACGGTTTGACGAGCGGCGGAGCGGCCGAGTTGCTGAAAGAGAGAGGTGTGGA 1021
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1180 CCAGGCGAACGGTTTGACGAGCGGCGGAGCGGAGGAGTTGCTGAAAGAGAGAGGTGTGGA 1239
Query 1022 AACGGCGCCGTTTGGGGTAAAACGGTTACTAACGGAGAGTAACGGAGCAAGAATCGAGGG 1081
||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 1240 AACGGCGCCGTTTGGGGTAAAACGGATACTAACGGAGAGTAACGGAGAAAGAATAGAGGG 1299
Query 1082 TTTCGTGCAGCGCCTTGTTGCTTCAGGAAAGTCAAGTCTACCTCCAAGTCCTTGCAAGGA 1141
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1300 TTTCGTGCAACGTCTTGTTGCGTCAGGAAAGTCAAGTCTACCTCCAAGTCCTTGCAAGGA 1359
Query 1142 ATCTGCCGTTAACCCTCTCGCTGACGGCCGTTAAGTTCCCTTT 1184
||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1360 ATCTGCCGTTAACCCTCTCGCTGACGGCCGTTAAGTTTCCTTT 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58684437105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5