BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939419
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63220.2 | Symbols: | Galactose oxidase/kelch repeat superf... 1509 0.0
> AT3G63220.2 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:23357392-23359148 REVERSE LENGTH=1757
Length=1757
Score = 1509 bits (817), Expect = 0.0
Identities = 985/1066 (92%), Gaps = 12/1066 (1%)
Strand=Plus/Plus
Query 19 AACAATGTCTGGGCTGCTGGAAAGTATTCCAGACGCAGTGGCTCTGAGATGCCTCGCTCA 78
||||||||||||||||||||| | || || || |||||||||||||||||||| |||||
Sbjct 568 AACAATGTCTGGGCTGCTGGATGGAATCCCCGAAGCAGTGGCTCTGAGATGCCTGGCTCA 627
Query 79 TGTGCCTTTACACCTTCATCCCAATTTAGAACTCGTGTCTCGCTCCTGGCGAGCAGCTAT 138
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 628 TGTGCCTTTACACCTTCATCCCAATTTAGAACTCGTCTCTCGCTCCTGGCGAGCTGCTAT 687
Query 139 CCGCAGTGC-TGAGCTCTTCCGAGTCCGTCAAGAGGTCCGCTCATCTGAGCATCTCCTCT 197
||||||| | |||||||||| |||||||| ||||| |||| || ||||||||||||||||
Sbjct 688 CCGCAGT-CATGAGCTCTTCAGAGTCCGTAAAGAGCTCCGATCTTCTGAGCATCTCCTCT 746
Query 198 GCGTCTGTGCTTTCGACCCTGAGAACATCTGGCAAGTCTACAGTCCCAACTGCGATCGCT 257
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 747 GCGTCTGTGCTTTCGATCCTGAGAACATCTGGCAAGTCTACAGTCCCAACTGTGATCGCT 806
Query 258 GGCTCACTCTCCCTCTCCTTCCTTC-CAGAATCCGCCACCTTGCCCATTTCGGGGCCGTC 316
||||||| ||||||||||||||||| | | ||||||||||||||||||||||| || |||
Sbjct 807 GGCTCACCCTCCCTCTCCTTCCTTCTC-GTATCCGCCACCTTGCCCATTTCGGTGCTGTC 865
Query 317 ACTACCGCCGGGAAGCTCTTTGTCTTAGGCGGAGGCAGCGATGCTGTCAATCCCT-TGAC 375
||||| ||||| | |||||||||||||||||| |||||||| |||||| | |||| | ||
Sbjct 866 ACTACTGCCGGCATGCTCTTTGTCTTAGGCGGTGGCAGCGACGCTGTC-AGCCCTGTTAC 924
Query 376 CGGGGATCACGACGGCACCTTTGCAACCGATGAGGTCTGGTCTTACGACTTTGTACAGAG 435
||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||
Sbjct 925 CGGGGATCACGACGGTACCTTTGCTACTGACCAGGTCTGGTCTTACGACTTTGTACAGAG 984
Query 436 ACGA-TGGACTCCTCTCGCATCAATGCTCTTGCCTCGTGCTATGTTCGCCTGTTGCGTTC 494
|| | |||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct 985 AC-AGTGGACTCCTCGCGCTTCAATGCTCGTGCCTCGTGCTATGTTCGCCTGCTGCGTTC 1043
Query 495 TTGAAGGGAAGATTGTTGTTGCTGGTGGCTTCACGACTTGCAGGAAATCGATATCTGGAG 554
|| |||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||
Sbjct 1044 TTCAAGGGAAGATTGTTGTTGCTGGCGGATTCACCACTTGCAGGAAATCCATATCTGGAG 1103
Query 555 CGGAGATGTATGATCCTGAGAATGACGTCTGGACATCCATCCCAGATCTCCACCGGACAC 614
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1104 CGGAGATGTATGATCCTGAGAATGACGTCTGGACATCCATCCCAGATCTCCACCAGACTC 1163
Query 615 ATAACTCTGCCTGCTCGGGTCTAGTGGTAAACGGGAAAGTTCACGTCTTGCACAAGGGCT 674
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1164 ATAACTCTGCCTGCTCGGGTCTAGTGGTAAACGGGAAAGTCCACGTCTTGCACAAAGGCT 1223
Query 675 TATCGACGGTGCAGGTTCTTGAGAGCGTTAAACTCGGATGGGCTGTGAAAGACTATGGCT 734
| || |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 1224 TGTCCACGGTGCAGGTTCTTGAGAGCGTTAAACTCGGGTGGGATGTCAAAGACTATGGCT 1283
Query 735 GGCCGCAAGGTCCAATGGCGGTTGTGGAGGACGTGCTCTACGTGATGAGCCATGGGCTGG 794
|||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1284 GGCCGCAAGGTCCAATGGTGGTCGTTGAGGACGTGCTTTACGTGATGAGCCATGGGCTGG 1343
Query 795 TGTTCAAGCAAGAAGGTGACACGTGGAAGATGGTTGCATCGGCCTCAGAGTTTAAGCGGA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 TGTTCAAGCAAGAAGGTGACACGTGGAAGATGGTTGCATCGGCCTCAGAGTTTAAGCGGA 1403
Query 855 GGATTGGAATGGCCATGACGAGTTTGAGCGAAGAGGTTTTGATCGTAGGGGGAGTGATTG 914
|||| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| |
Sbjct 1404 GGATCGGAATGGCGATGACGAGTTTGAGTGATGAGGTTTTGATCGTAGGAGGAGTGATCG 1463
Query 915 GACCTGATAGGCTCAACTGGGACATCAAACCGTTGTCAGACGTCGACGTTTTGACAGTTG 974
|||||||||||||||| ||||||||||| || |||||||| ||||||| |||||||||||
Sbjct 1464 GACCTGATAGGCTCAATTGGGACATCAAGCCCTTGTCAGATGTCGACGCTTTGACAGTTG 1523
Query 975 GGAATGATCGTCCGGCGTGGCGGAGGGTGGCCCCGATGACAAGGTGTCGTGGGACGATCC 1034
|||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 1524 GGAATGATCGTCCGGCCTGGAGGAGTGTGGCGCCGATGACAAGGTGTCGTGGGACGATCC 1583
Query 1035 TTGGCTGCACGCAGTTGACAATCTGATGG--G--AATGTGGCTTCA 1076
||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1584 TTGGCTGCACGCAGTTGACAATCTGATGGATGGGAATGTGGCTTCA 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5