BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939441

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63420.1 | Symbols: AGG1, ATAGG1, GG1 | Ggamma-subunit 1 | c...   451    2e-126


> AT3G63420.1 | Symbols: AGG1, ATAGG1, GG1 | Ggamma-subunit 1 | 
chr3:23417272-23418640 FORWARD LENGTH=643
Length=643

 Score =  451 bits (244),  Expect = 2e-126
 Identities = 275/290 (95%), Gaps = 2/290 (1%)
 Strand=Plus/Plus

Query  43   AGGAGGAGCCTGTTTCTCTCGGCGGCGGCAAGCACAGGATCCTTGCAGAGCTTGCCCGCG  102
            |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct  140  AGGAGGAGTCTGTTTCTCACGGCGGGGGCAAGCACAGGATCCTTGCAGAGCTTGCCCGCG  199

Query  103  TTGAACAGGAAGTCGTTTTCTTGGAGAAAGAGTTGGAA-GAGGTTGAGAACACAGATATT  161
            ||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct  200  TTGAACAGGAAGTCGCTTTCTTGGAGAAAGAGTT-GAAGGAGGTCGAGAACACAGATATT  258

Query  162  GTATCATCCGTGTGTGAGGAGCTGCTCTGTGTCATTGAGAAAGGACCCGATCCTCTGTTG  221
            |||||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct  259  GTATCAACCGTGTGTGAGGAGCTGCTATCTGTCATCGAGAAAGGACCCGATCCTCTGTTG  318

Query  222  CCACTAACCAATGGACCTTTTAACTTAGGATGGGACCGGTGGTTTGAAGGACCAAATGGA  281
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  319  CCACTAACCAATGGACCTTTGAACTTAGGATGGGACCGGTGGTTTGAAGGACCAAATGGA  378

Query  282  GGAGAAGGCTGCAGATGCTTAATACTTTGATTCACGAGAGAGAGTAATGT  331
            ||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct  379  GGAGAAGGCTGCAGATGCTTAATACTTTGATTCGCTAGACAGAGTAATGT  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15432198943


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5