BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939448
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63480.1 | Symbols: | ATP binding microtubule motor family ... 2414 0.0
> AT3G63480.1 | Symbols: | ATP binding microtubule motor family
protein | chr3:23440887-23444006 REVERSE LENGTH=1684
Length=1684
Score = 2414 bits (1307), Expect = 0.0
Identities = 1395/1439 (97%), Gaps = 0/1439 (0%)
Strand=Plus/Plus
Query 18 GAGATGTCTAACGTAACCGTCTGTGCGCGATTTAGGCCCCGAAGCTCTAAAGAGATGCGC 77
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 94 GAGATGTCTAACGTAACCGTCTGTGCGCGATTCAGGCCGCGAAGCTCTAAAGAGATGCGC 153
Query 78 GATCCCAGCAGAGATGGTGTTTGTGCTCGACCCATCGACGCTGAAACCTTCGTTTTCCAA 137
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 154 GATCCCAGCAGAGATGGTGTCTGTGCTCGACCCATCGACGCTGAAACCTTCGTTTTCCAA 213
Query 138 GATGACAAGGAAGATGAATTTACATTTAGCCTTGATAGAGTTTTTTATGAGGACTCTACC 197
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 214 GATGACAAGGAAGATGAATTTACATTTAGCCTCGATAGAGTTTTTTATGAGGACTCTACC 273
Query 198 CAAGCTGCGCTTTATGAGTTTCTGGCTCTCCCCATCATGAGAGACGCTGTAAATGGTATC 257
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 CAAGCTGCGGTTTATGAGTTTCTGGCTCTCCCCATCATGAGAGACGCTGTAAATGGTATA 333
Query 258 AACGGAACAATCATCACTTATGGACAGACAGGGGCTGGGAAGACATATTCCATGGAGGGA 317
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 334 AACGGAACAATCATCACTTATGGACAGACAGGGGCTGGGAAGACTTATTCCATGGAGGGA 393
Query 318 CCAGGCATCCACGACTGTGATGACCACAATAAAGGACTACTTCCAAGAGTGGTCCATGGG 377
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 394 CCAGGCATCCAGGACTGTGATGAGCACAATAAAGGACTTCTTCCAAGAGTGGTCCATGGG 453
Query 378 ATGTTTGAGCAAATCAGCTCTTCCAATGATTTTGCAAGATACACTGTTAAATTGTCTATG 437
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 454 ATGTTTGAGCAAATCAGCTCTTCCAATGATATTGCAAGATACACTGTTAAATTGTCTATG 513
Query 438 GTTGAGATCTACATGGAGAAAGTCAGGGACCTGTTAGACTTATCAAAAGCAAACATACAG 497
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 514 GTTGAGATCTACATGGAGAAAGTCAGGGACCTGTTGGACTTATCAAAAGCAAACATACAG 573
Query 498 ATCAAGGAGAACAAAACACAAGGAATTCTCTTGTCAGGCGTTACAGAGGCTAGCTTCATT 557
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 574 ATCAAGGAGAACAAAACACAAGGAATACTCTTGTCAGGCGTTACAGAGGCTAGCTTCATT 633
Query 558 GTGCCTGTATCAGATTCGGCGGAGGCATTACAACATCTATGCACCGGTTTAGCAAACCGC 617
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 634 GTGCCTGTATCAGATTCGGTGGAGGCATTACAACATCTATGCACCGGTTTAGCTAACCGC 693
Query 618 GCAGTTGGAGAAACCCAAATGAATATGTCCAGCAGTAGAAGCCACTGCGCCTACTTGTTC 677
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GCAGTTGGGGAAACCCAAATGAATATGTCCAGCAGTAGAAGCCACTGCGCCTACTTGTTC 753
Query 678 ACAATCCAGCAGGATTCAGTTAAAGATAAGAGGGTAAAAACAGGAAAACTGATTCTTGTC 737
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 754 ACAATCCAGCAGGATTCAGTTAAAGATAAAAGGGTAAAAACAGGAAAACTGATTCTTGTC 813
Query 738 GACCTGGCTGGCTCAGAGAAAGCAGACAAAACTGGAGCAGAAGGTAGGGTTCTTGAAGAA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GACCTGGCTGGCTCAGAGAAAGCAGACAAAACTGGAGCAGAAGGTAGGGTTCTTGAAGAA 873
Query 798 GCGAAGACGATCAATAAATCGCTCTCAGCCTTGGGGAACGTGATAAACGCTCTCACAAGT 857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 874 GCGAAGACGATCAATAAATCGCTCTCAGCCTTGGGGAACGTGATAAACGCTCTCACTAGT 933
Query 858 GGGTCATCTAGCAAAGCGAATCACATACCATATCGTGACTCCAAACTTACTCGCATCTTA 917
||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 934 GGGCCATCTAGCAAAGGGAATCACATACCATATCGTGACTCCAAGCTTACTCGCATCTTA 993
Query 918 CAGGATGCCCTGGGTGGGAATTCTCGAATGGCACTGCTTTGCTGTTGCTCACTAAGCACT 977
||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 994 CAGGATGCCCTGGGTGGAAATTCTCGAATGGCGCTGCTTTGCTGTTGCTCACCAAGCACT 1053
Query 978 TTAAATGCATCTGAGACGCTCTCAACCCTCAGGTTTGGCATGAGGGCAAAACACATCAAA 1037
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1054 TTAAATGCATCTGAGACGCTCTCAACTCTCAGGTTTGGCATGAGGGCAAAACACATAAAA 1113
Query 1038 GCATCACCACGTGCCAGTGAAGTGAAATCTGCGCAGGCACAGGAGGAACCCTCCTCGGTA 1097
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1114 GCATCACCACGTGCTAGTGAAGTGAAATCTGCGAAGGCACAGGAGGAACCCTCCTCGGTT 1173
Query 1098 ACCAAAGATGAAAAATGTGGGAGGATCCTAGAGAAGATGAAAGAGAGGATGAGCAACGAA 1157
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1174 ACCAAAGATGAAAAATGTGGGAGGATCCTAGAAAAGATGAAAGAGAGGATGAGCAACGAA 1233
Query 1158 GACATCAAGATGCTAGAAGAAGTGTTTATACAGGAAGGGATCATTTTCAGCCTAGATTCT 1217
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GACATCAAAATGCTAGAAGATGTGTTTATACAGGAAGGGATCATTTTCAGCCTAGATTCG 1293
Query 1218 ATGGAAGAAGTGGAAACCGCATACGAAGATATTGTATCAAAAACTATACAATCCTTACAG 1277
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 ATGGCTGAAGTGGAAACCGTATACGAAGATATTGTATCAAAAACTATACAATCCTTACAG 1353
Query 1278 CAGGCTGTTGATGAACTCCAACTGAAAGTCAAAAAGTTAGAAGCAGAAAACATGGGTATT 1337
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1354 CAGGCTGTTGATGAACTCCAACAGAAAGTCAAAAAGTTAGAAGCAGAAAACATAGGTATT 1413
Query 1338 CAGGTACAAGCATTGTGCAATCACGAACCTGGTCCGGTTGGAAAGATGTCAAGGTTCATC 1397
|||| |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1414 CAGGAACAAGCATTGCGCAATCACGAACCTGGTTCGGTCGGAAAGATGTCAAGGTTCATC 1473
Query 1398 AGTTCTTGGTATGCATCGTTCTTTACGTCCTAAAGATGATAATATGAATATACTCTCTT 1456
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1474 AGTTCTTGGTATGCATCGTTCTTTACGTCCTAAAGATGATAAAATGAATATACTATCTT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5