BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939449
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63490.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 1618 0.0
> AT3G63490.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr3:23444203-23446355 FORWARD LENGTH=1442
Length=1442
Score = 1618 bits (876), Expect = 0.0
Identities = 1029/1097 (94%), Gaps = 34/1097 (3%)
Strand=Plus/Plus
Query 1 GAAAGAAAGAGAGCTCCAAGAATGGCTGCCTGCGCCACTCACTCCTCTCTCATGCTAGCA 60
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 46 GAAAGAAAGAGAGCTCCAACAATGGCTGCTTGCGCTACTCACTCCTCTCTCATGCTAGCA 105
Query 61 TA---CGCCG------CTCGTTCCCAGGACCTTAcccccccTACTCCATCTCTTTTCTCT 111
|| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 106 TACGCCGCCGCATCCACTCGTTCCCAGGACCTTA---CCCCTACTCCATCTCTTTTCTCT 162
Query 112 TTTGCCAGCTCTAGACCCAACCACTTGAGCGTCCCGCTTCTTCTCCTTGGGGGTTCCAGG 171
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 163 TTTGCCAGCTCCAGACCCAACCACTTGAGCTTCCCGCTTCTTCTCCTTGGGGGTTCCAGG 222
Query 172 GACCGCAGA-----TG----TGACAGAGCTTCCAACCGAGCTTTCCAGGTTATTGTCTCC 222
||||| ||| || ||||||||||||||||| | | || |||||||||||
Sbjct 223 GACCGGAGATGTGCTGCTATTGACAGAGCTTCCAACC-A-----CAAGTTTATTGTCTCC 276
Query 223 GCCGTGGCCGCTGAGGCTGACCTCGACACCGAGGAAGACGACCTGGAGCAGACCGCCACC 282
||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 277 GCCGTGGCCGCTGAGGCTGACCTCGACACGGAGG-AG--GACCTGGAGCAGACCGCCACC 333
Query 283 GCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGAC 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GCCGTCCTTGATCCGCCCAAGCCTAAGAAAGGAAAAGCCGCTTTGGTTCTCAAGAGAGAT 393
Query 343 AGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTAT 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 AGAACAAGGTCTAAGAGGTTTTTGGAAATCCAAAAGCTAAGGGAAACCAAAAAGGAGTAT 453
Query 403 GATGTCATCACTGCTATATCTTTGCTTAAACAAACTGCCAACACCAGGTTTGTTGAGTCT 462
||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 454 GATGTCAACACTGCTATCTCTTTGCTTAAACAAACTGCCAACACAAGGTTTGTTGAGTCT 513
Query 463 GTTGAAGCCCATTTCCGTCTCAACATCGATCCAAAGTACAATGACCAGCAGCTGCGTGCT 522
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 514 GTTGAAGCCCATTTCCGTCTCAACATCGATCCTAAGTACAATGACCAGCAGCTGCGTGCA 573
Query 523 ACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 ACGGTGAGCCTGCCTAAGGGAACTGGCCAGACTGTTATAGTCGCTGTTCTTGCACAAGGT 633
Query 583 GAGAAGGTCGATGAAGCCAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATC 642
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 634 GAGAAGGTTGATGAAGCCAAAAGTGCAGGGGCAGATATTGTGGGCAGTGATGATTTAATC 693
Query 643 GAACAGATTAAAGGAGGCTTCATGGAGTTTGATAAGTTGATTGCATCCCCGGATATGATG 702
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 694 GAACAGATTAAAGGAGGCTTCATGGAGTTTGACAAGCTGATTGCATCCCCGGATATGATG 753
Query 703 GTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGCCCACGCGGACTCATGCCAAATCCCAAG 762
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 754 GTCAAGGTTGCTGGCCTGGGAAAGATTCTTGGACCACGGGGGCTCATGCCAAATCCCAAG 813
Query 763 GCTGGTACGGTCACAGCTAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTT 822
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GCTGGTACAGTCACAGCGAACATTCCCCAGGCTATTGAAGAGTTCAAGAAGGGGAAAGTT 873
Query 823 GAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCCTTTGGGAAAGTTAATTTTACA 882
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 874 GAATTCAGAGCAGACAAAACTGGGATTGTTCACATTCCATTTGGGAAAGTTAATTTTACA 933
Query 883 GAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCA 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 GAGGAAGACCTTCTCATAAACTTCCTTGCAGCAGTGAAATCGGTGGAGACAAACAAGCCA 993
Query 943 AAGGGAGCAAAAGGAGTGTACTGGAAAAGTGCACACATATGCTCATCAATGGGGCCTTCC 1002
|||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 994 AAGGGAGCTAAAGGAGTGTACTGGAAAAGCGCTCACATATGCTCGTCAATGGGGCCTTCC 1053
Query 1003 ATCAAGTTGAACATAAGGGAGATGATTGACTTCAAGCCTCCCGCTGCGAACTAACC-AGC 1061
||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| | | |
Sbjct 1054 ATCAAGTTGAACATAAGAGAGATGATAGACTTCAAGCCTCCCACTGCGAACTAATCGA-C 1112
Query 1062 AACCGC-ATCTGTAAAT 1077
||| || || |||||||
Sbjct 1113 AAC-GCCATTTGTAAAT 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5