BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939468
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01920.1 | Symbols: STN8 | Protein kinase superfamily protei... 2362 0.0
> AT5G01920.1 | Symbols: STN8 | Protein kinase superfamily protein
| chr5:359107-362904 FORWARD LENGTH=3489
Length=3489
Score = 2362 bits (1279), Expect = 0.0
Identities = 1446/1525 (95%), Gaps = 18/1525 (1%)
Strand=Plus/Plus
Query 14 AGATAAGATGGCCTCTCTTCTCTCTCCCGCCACGGCCACGGCCACCGCCACCTCCGCCGC 73
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 41 AGATAAGATGGCCTCTCTTCTCTCTCCCGCCA---CC-C--CCACCGCCACCTCCGCCGC 94
Query 74 TTTTCATTCCTGCTCCACCGCCGGTTTCCCCACTCCCACTCACATTTCATCCCAGAACAG 133
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 95 ATTTCATTCCTGCTCCACCGCCGGATTCTCCACTCCCACTCACATTTCATCCCAGAACAG 154
Query 134 CAGCC-G-CCGGGCTTA---TTC----TTATATGATGAGATGCAGTTTTTCTCCGCAGGA 184
||||| | || || | | || ||||||||||||||||||||||||||||||
Sbjct 155 CAGCCTGTCCCTCCTCAGCCGCCGGGGTTGTATGATGAGATGCAGTTTTTCTCCGCAGGA 214
Query 185 C-TTATCTGTTGAGTCTCTCTCTCATCTCCCTGCTTTCCATGACTTTCAGAATTCCCTCG 243
| || ||||||| || ||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 215 CATT-CCTGTTGATTCCCTCTCTCATCTCCCTCCTTTCCTTGACTTTCAGAACTCCCTCG 273
Query 244 CCACATTTTCGAATACCCAGAAATGGGAGTTCTTTTTCCCCGCCGGACTCGTCTGGTTTT 303
||||||||||| ||||||||||||||| ||||||| || |||||||| ||||||||||||
Sbjct 274 CCACATTTTCGGATACCCAGAAATGGGGGTTCTTTGTCTCCGCCGGAATCGTCTGGTTTT 333
Query 304 ACCTCACGGCGAGGCCTGGTGTTCTCATCGGCGCCATTGACGCCTACCTTCTCGCTCCGC 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 334 ACCTCACGGCGAGGCCTGGTGTTCTCATCGGCGCCATTGACGCCTACCTTCTCGCTCCCC 393
Query 364 TCCAGCTTGGCCTCGACACTCTGATTGGTAGGAGGTTGAAGAGGTCCGATTTCTTGGTCA 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 394 TCCAGCTTGGCCTCGACACTCTGATTGGAAGGAGGTTGAAGAGGTCCGATTTCTTGGTCA 453
Query 424 CGGAGAAACTCGGCGAAGGCTCTTTCGGCGTCGTCTATGCCGGCGTCCTACTCCCCAAGA 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 CTGAGAAACTCGGCGAAGGCTCTTTCGGCGTCGTCTATGCCGGCGTCCTACTCCCCAAGA 513
Query 484 ATTCTACTGTTGTTGATGAGGCTAGGCTTAGCAAAGCAAGAGCTAAAGCTATGGAATTTA 543
|||||||| |||||||||| | |||| |||||||||||||||||||||| ||||| ||||
Sbjct 514 ATTCTACTCTTGTTGATGACGTTAGGGTTAGCAAAGCAAGAGCTAAAGCGATGGACTTTA 573
Query 544 CCGGCGAATTCAAGCAGAGAGTCATCCTCAAGAAGGTCAAGGTGGGAGTACGAGGGGCTG 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 574 CCGGCGAATTCAAGCAGAGAGTCATCCTCAAGAAGGTCAAGGTGGGAGTACGAGGGGCCG 633
Query 604 AGGAATTCGGCGAGTTCGAAGAGTGGTTCAACTACAGACTCTCAAGGGCCGCTCCTGAGA 663
||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 634 AGGAATTTGGCGAGTACGAAGAGTGGTTCAACTACCGACTCTCAAGGGCCGCTCCTGACA 693
Query 664 CCTGCGCTGAGTTTCTCGGAAGCTTTGTCGCCGACAAGACCAATACTATGTTTACTAAAG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CCTGCGCTGAGTTTCTCGGAAGCTTTGTCGCCGACAAGACCAATACTATGTTTACTAAAG 753
Query 724 GCGGCAAATGGCTTGTCTGGAGGTTCGAGGGAGACCGTGATCTCGCTGATTACATGAAAG 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GCGGCAAATGGCTTGTCTGGAGGTTCGAGGGAGACCGTGATCTCGCTGATTACATGAAAG 813
Query 784 ATCGGAGCTTTCCTTCCAATCTGGAGTCCATCATGTTTGGGCGCGTTCTCCAAGGAGTAG 843
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 814 ATCGGAGCTTTCCTTCTAATTTGGAGTCCATCATGTTTGGGCGCGTTCTCCAAGGAGTCG 873
Query 844 AGTCTGTGAAAAGTCGTGCATTGATCATTAAGCAGATCATGCGCCAGATCATTACATCTC 903
||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 874 AGTCTGTGAAACGTCGTGCACTGATCATTAAGCAGATTATGCGCCAGATCATTACATCTC 933
Query 904 TCAAGAAAATCCATGATACGGGCATTGTTCACCGGGACGTGAAGCCTGCCAACTTGGTGG 963
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TCAGGAAAATCCATGGCACGGGCATTGTTCACCGGGACGTGAAGCCTGCCAACTTGGTGG 993
Query 964 TTACAAAGAAGGGCCAGATTAAGCTCATCGACTTTGGTGCTGCTGCTGATCTTCGCATTG 1023
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 994 TTACAAAGAAGGGCCAGATTAAGCTCATCGACTTTGGTGCCGCTGCTGATCTTCGCATTG 1053
Query 1024 GCAAGAATTACATCCCGGAACGCACTTTACTCGATCCTGACTACTGTCCTCCTGAGCTCT 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 GCAAGAATTACATCCCGGAACGCACTTTACTCGATCCTGACTACTGTCCTCCTGAGCTCT 1113
Query 1084 ATGTCCTCCCTGAGGAAACGCCAAGTCCTCCTCCCGAGCCTATTGCCGCTTTGCTTTCCC 1143
|||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1114 ATGTCCTCCCGGAGGAAACGCCAAGCCCTCCTCCGGAGCCTATAGCCGCTTTGCTTTCCC 1173
Query 1144 CGATTCTCTGGCAGTTGAACAGTCCGGATCTGTTTGATATGTATTCTGCTGGGATTGTGC 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1174 CGATTCTCTGGCAGTTGAACAGTCCGGATCTGTTTGATATGTATTCTGCTGGGATAGTGC 1233
Query 1204 TCCTGCAAATGGCGGTTCCGACCTTAAGATCTACTGCCGGTCTGAAGAATTTTAATCTGG 1263
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TTCTCCAAATGGCGGTTCCGACCTTAAGATCTACTGCCGGTCTGAAGAATTTTAATCTGG 1293
Query 1264 AGATCAAGTCAGTTGAATATGATCTTAATAGATGGCGGGACAGGACTCGGACGAGGCCAG 1323
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1294 AGATCAAGTCTGTTGAATATGATCTTAATAGGTGGCGGGAAAGGACTCGGACGAGGCCAG 1353
Query 1324 ACTTGAGCATACTAGATCTGGACTCGGGCAGAGGGTGGGACCTCGTCACTAAACTCGTAT 1383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1354 ACTTGAGCATACTAGATCTGGACTCGGGCAGAGGGTGGGACCTCGTCACTAAACTCATAT 1413
Query 1384 CCGAGAGAGGTTCTCTGAGACGTGGGCGCCTTTCAGCAGCTGCTGCTCTCAGACACCCTT 1443
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1414 CCGAGAGAGGTTCTCTGAGACGTGGACGCCTTTCAGCAGCTGCTGCTCTCAGACACCCTT 1473
Query 1444 ATTTTTTGCTGGGTGGTGATCAAGCGGCCGCTGTTCTTTCAAAGCTCACTTTCAGCAAGT 1503
|||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1474 ATTTTTTGTTGGGCGGTGATCAAGCGGCCGCTGTTCTTTCAAAGCTCAGTTTCAGCAAGT 1533
Query 1504 GACTCTGATTTTA-TTCTTATGATG 1527
||||||||||| | |||||||||||
Sbjct 1534 GACTCTGATTTAAATTCTTATGATG 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5