BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939469
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01910.1 | Symbols: | unknown protein; Has 66 Blast hits to... 549 1e-155
> AT5G01910.1 | Symbols: | unknown protein; Has 66 Blast hits
to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa
- 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr5:357795-358799 REVERSE
LENGTH=842
Length=842
Score = 549 bits (297), Expect = 1e-155
Identities = 532/633 (84%), Gaps = 66/633 (10%)
Strand=Plus/Plus
Query 11 ACaaaaaaaaaTGAAATGTTCAGGTCGAAAAGCTCTGCAGCCGAAG-AACATCTTCCAGA 69
||||||| ||||||||||||||||||||||||| ||||||||| || ||||||| |||||
Sbjct 135 ACAAAAAGAAATGAAATGTTCAGGTCGAAAAGCACTGCAGCCG-AGAAACATCTACCAGA 193
Query 70 CCCCAAAGGAGGATGCTTTCGTGGTGAAGGCCAAAGCTGC--TG-AGCTGAA-G-G-A-- 121
|||||||||||||||||||| | |||||| |||||||||| | |||| || | | |
Sbjct 194 CCCCAAAGGAGGATGCTTTCTTCGTGAAGCCCAAAGCTGCAGAGAAGCTCAAGGAGAATC 253
Query 122 -GAATC-T--G------ATCGATGCTTCTCTTGCGGAGGAGCTTAGTTCCTTTaagaaga 171
||||| | | |||||||||||||||||||||||||||||| |||| |||||||
Sbjct 254 TGAATCTTGAGACATCAATCGATGCTTCTCTTGCGGAGGAGCTTAGTGCCTTCAAGAAGA 313
Query 172 aactcgagaggcagagagaggatagagagaggactgagaagctgctaaaggagagagatg 231
|||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 314 AACTCGAGAGGCTGAGAGAGGATCGAGAGAGCACTGAGAAGCTGCTAAAGGAGAGAGATG 373
Query 232 gagCCATGGATGTGCAGATGAGCCATCTTCTCCAGAGAGGAGAGACACAGAAAAGCCTTG 291
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AAGCCATGGATCTGCACATGAGCCATCTTCTCCAGAGAGGAGAGACACAGAAAAGCCTTG 433
Query 292 AAATCCAGGTCGATCGCCTCTTTCGATTGAAGGAGCTCCACGCCTATTCCTCTAAGATTT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AAATCCAGGTCGATCGCCTCTTTCGATTGAAGGAGCTCCACGCCTATTCCTCTAAGATTT 493
Query 352 CCCCAATCCGATCTCTGAGAGCCAAGGAGCATG-AG-AG--GATGCGACGCTTCAGCTTC 407
| ||||||||||||||||||||||||||||| | || || |||| ||||||||| ||||
Sbjct 494 CTCCAATCCGATCTCTGAGAGCCAAGGAGCA-GCAGGAGAAGATGAGACGCTTCACCTTC 552
Query 408 GTGACCCAGAAGAAGAAGAAGAAAGCCCCG-TCGAGAGGAAGAATCTCGA-GAGCATTGC 465
| | || | |||||| || || | | || || ||| || || ||| || ||
Sbjct 553 G---C--AG--GT-GAAGAACAA--CCA-GAT-GA-AGAAAGC-TC-CGTCGAG-ATCGC 596
Query 466 AAATGGGCCCATGGAACAAGAAGAAAGCTCGACGACCAAG-AATAATGTCG-AGA----T 519
||||||||||| ||| |||||||||||||| | ||| ||| ||| | ||| |
Sbjct 597 TAATGGGCCCATTGAA---GAAGAAAGCTCGACCAA-AAGTAATG-TGTTGGAGAGAGAT 651
Query 520 C--ATCCTC--AA-TACCCAT---ATC-T--CTTGATATTGTAATGTCTCGTTACAATTG 568
||| || || |||||| ||| | |||||||||||||||||||||||||||||
Sbjct 652 ATGATCATCGCAAATACCCAACCCATCATATCTTGATATTGTAATGTCTCGTTACAATTG 711
Query 569 GGCTTTTTCTCTTGATCCATAGGCCCATTCTTT 601
||||||| |||||||||||||||||||||||||
Sbjct 712 GGCTTTT-CTCTTGATCCATAGGCCCATTCTTT 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5