BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939479
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01810.1 | Symbols: CIPK15, ATPK10, PKS3, SNRK3.1, SIP2 | CB... 2025 0.0
> AT5G01810.1 | Symbols: CIPK15, ATPK10, PKS3, SNRK3.1, SIP2 |
CBL-interacting protein kinase 15 | chr5:309715-312097 FORWARD
LENGTH=2102
Length=2102
Score = 2025 bits (1096), Expect = 0.0
Identities = 1246/1318 (95%), Gaps = 12/1318 (1%)
Strand=Plus/Plus
Query 1 CTCTAAGCTAATCAGTGAGTCAATGGAGAAGAAAGGGTCTGTGCTCATGCTCCGTTATGA 60
||||||||||| |||| ||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 443 CTCTAAGCTAACCAGTTAGTCAATGGAGAAGAAAGGATCTGTGTTGATGCTCCGTTATGA 502
Query 61 GGTTGGCAAGTTTCTTGGTCAAGGTACCTTTGCTAAGGTATACCATGCTAGGAATTTGAA 120
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 503 GGTTGGGAAGTTTCTCGGTCAAGGTACCTTTGCTAAGGTATACCATGCTAGGCATTTGAA 562
Query 121 AACTGGTGATAGTGTTGCTATTAAGGTCATCGACAAAGACAGAATCCTCAAAGTTGGCAT 180
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 563 AACTGGTGATAGTGTAGCGATTAAGGTCATCGACAAAGAAAGAATCCTCAAAGTTGGCAT 622
Query 181 GACCGAGCAGATTAAGCGAGAGATCTCTGTCATGAGACTCTTGAGGCATCCCAACATCGT 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 623 GACCGAGCAGATTAAGCGAGAGATCTCTGCCATGAGACTCTTGAGGCATCCCAACATCGT 682
Query 241 TGAGCTCCATGAAGTCATGGCCACCAAATCTAAAATCTACTTCGTGATGGAGCACGTTAA 300
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 683 TGAGCTCCATGAAGTCATGGCCACCAAATCTAAAATCTACTTCGTCATGGAACATGTTAA 742
Query 301 GGGTGGTGAGCTCTTCAACAAAGTGTCAACTGGGAAGCTGAGAGAAGACGTTGCGAGAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GGGTGGTGAGCTCTTCAACAAAGTGTCAACTGGGAAGCTGAGAGAAGACGTTGCGAGAAA 802
Query 361 GTACTTTCAACAGCTTGTACGCGCTGTTGACTACTGTCACAGCCGTGGAGTATGCCACAG 420
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 803 GTACTTTCAGCAGCTTGTACGCGCTGTTGACTTCTGTCACAGCCGTGGAGTATGCCACAG 862
Query 421 GGACCTCAAGCCTGAGAATCTCTTGTTGGATGAGCA-GGGTAATCTTAAGGTCTCTGATT 479
|||||| ||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 863 GGACCTGAAGCCGGAGAATCTCTTGTTGGATGAGCATGGG-AATCTTAAGATCTCTGATT 921
Query 480 TTGGTCTCAGCGCTCTTGCTGACTCTACAAGGCAAGATGGGTTGCTGCACACTACATGCG 539
||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 922 TTGGTCTCAGCGCTCTTTCTGACTCTAGAAGGCAAGACGGGTTGCTGCATACTACATGCG 981
Query 540 GGACCCCTGCATATGTTGCACCGGAGGTCATAAGCAGGAG-GGGCTATGATGGGTTTAAA 598
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 982 GGACCCCTGCATATGTTGCACCGGAGGTGATAAGCAGGAACGGG-TATGATGGGTTTAAA 1040
Query 599 GCGGATGTGTGGTCCTGTGGAGTGATATTGTTCGTCTTGCTTGCGGGATATCTCCCTTTC 658
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 1041 GCGGATGTGTGGTCCTGTGGAGTGATATTGTTCGTCTTGCTCGCTGGATATCTTCCTTTC 1100
Query 659 CGTGATTCCAATCTCATGGAGCTGTATAAGAAGATAGGCAAAGCTGAGGTCAAGTTCCCC 718
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1101 CGTGATTCCAATCTGATGGAGCTGTATAAGAAGATAGGCAAAGCTGAAGTCAAGTTCCCC 1160
Query 719 AACTGGCTTGCTCCGGGGGCAAAGAGATTGCTCAAGAGGATTTTTGATCCTAACCCAAAC 778
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 1161 AACTGGCTTGCTCCGGGGGCAAAGAGATTGCTCAAGAGGATCTTGGATCCTAACCCCAAC 1220
Query 779 ACAAGGGTATCAACTGAGAAAATAATGAAGAGCTCTTGGTTCCGTAAAGGCCTACAACTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1221 ACAAGGGTATCAACTGAGAAAATAATGAAGAGCTCTTGGTTCCGTAAAGGCCTACAA--G 1278
Query 839 CAAGACGAGGAGAAAGAATCAGTTGACGAAGAGACAGAAGTGGAGGTAGAGACTA-ACGC 897
| | |||| ||||||||||||||| ||||||||||||||||| | |||| | | | |
Sbjct 1279 -A-G--GAGGTGAAAGAATCAGTTGAGGAAGAGACAGAAGTGGACGCAGAGGC-AGAGGG 1333
Query 898 AAACGCAAGTGCAGAGAAGGAAAAGAAGCGGTGTATCAACCTGAACGCATTTGAAATAAT 957
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1334 AAACGCAAGTGCAGAGAAGGAAAAGAAGCGGTGTATCAACCTGAACGCGTTTGAGATCAT 1393
Query 958 ATCGCTGTCGACGGGGTTTGATCTCTCGGGGCTGTTCGAGAAGGGAGAGGAGAAGGAGGA 1017
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1394 ATCTCTGTCCACGGGGTTTGATCTCTCGGGACTGTTCGAGAAGGGAGAGGAGAAGGAGGA 1453
Query 1018 GATGAGGTTTACATCGAACAGAGAGGCATCTGAGATAACAGAGAAGCTGGTGGTGATAGG 1077
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1454 GATGAGGTTTACATCAAACAGAGAGGCATCTGAGATAACAGAGAAGCTGGTGGAGATTGG 1513
Query 1078 GAAGGAGCTTAAGATGAAAGTGAGGAAGAAGGAACAAGAATGGAGGGTGAAAATGTCGGC 1137
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1514 GAAGGACCTTAAGATGAAAGTGAGGAAGAAGGAACACGAATGGAGGGTGAAAATGTCGGC 1573
Query 1138 TGAGGCTACAGTGGTGGAAGCGGAGGTGTTTGAGATTGCACCGAGCTATCACATGGTGGT 1197
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1574 TGAGGCTACAGTGGTGGAAGCGGAAGTGTTTGAGATTGCGCCGAGCTATCACATGGTGGT 1633
Query 1198 GCTAAAGAAGAGCGGTGGAGATACGGCGGAGTATAAGAGAGTCATGAAGGAGAGTATAAG 1257
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1634 GCTAAAGAAGAGCGGTGGAGATACTGCTGAGTATAAGAGAGTCATGAAGGAGAGTATAAG 1693
Query 1258 ACCGGCTTTGATCGACATTGTATTAGCTTGGCACTGAAACATAATCTATTCTCTTTAT 1315
|||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 1694 ACCGGCTTTGATCGACTTTGTATTAGCTTGGCACTGAAACATATTCTATCCTTTTTAT 1751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64708502505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5