BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939482
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01780.2 | Symbols: | 2-oxoglutarate-dependent dioxygenase ... 1136 0.0
> AT5G01780.2 | Symbols: | 2-oxoglutarate-dependent dioxygenase
family protein | chr5:302267-304188 REVERSE LENGTH=1486
Length=1486
Score = 1136 bits (615), Expect = 0.0
Identities = 950/1100 (86%), Gaps = 70/1100 (6%)
Strand=Plus/Plus
Query 40 ttcttctACTCACTCTCCGATTCGAAAGACGCCA-ACTACATCGTTTGAATCACTCAATA 98
||||||| ||||||||||||| | ||||||| || ||| ||||| |||| ||||| |||
Sbjct 155 TTCTTCTCCTCACTCTCCGATCCCAAAGACG-CATACTGCATCGCTTGACTCACTTAATG 213
Query 99 ATTATGACGAGCAATTTCCACCACTTACTGGCGGCTCTCAGAAGAAGAAGGTTTCACCAA 158
||||||| ||||||||||||||||||||||| |||||| |||| ||| |
Sbjct 214 ATTATGAAGAGCAATTTCCACCACTTACTGGTGGCTCT---AAGACGAA-G--------- 260
Query 159 CAAGTGAGGTTGATCTTGGTTCTACCAATCCTTCTAGTTCATGTAAAAGTTCACAGTTTC 218
|||| || |||||||||||||||||||||||| | ||||| ||||||||||| |||
Sbjct 261 -AAGT----TTTATCTTGGTTCTACCAATCCTTCTACTCCATGTCAAAGTTCACAGCTTC 315
Query 219 AAAATTGG---A-C---AAGG--G----G----T--A-A-GAA-TAGGGAT-CAAG-GTA 254
|||| ||| | | |||| | | | | | ||| | ||||| ||| ||
Sbjct 316 AAAACTGGACAAGCGGTAAGGATGCTTTGTCTTTGCAGAGGAATTTGGGATGTAAGAATA 375
Query 255 CGAGGAGGAGACGGGCTTCACTGTTTATAGATGAAGAAGT-GAATGGGACAACTTTTGAT 313
|||||||||||||||||||| |||| || |||||||| | |||||||||||||||||
Sbjct 376 GGAGGAGGAGACGGGCTTCACGGTTTTTACATGAAGAA-TCCAATGGGACAACTTTTGAG 434
Query 314 GTTGGCGCTGGTACTGCTGGCTCACGAACAAGTGTTGTTGAGCTTGATTCTACCAACCCT 373
||||||||||||| | |||||| | ||||||| | ||| | |||||||||||||||||
Sbjct 435 GTTGGCGCTGGTA-T--TGGCTCTCCAACAAGTATGGTTCATTTTGATTCTACCAACCCT 491
Query 374 TCTTCTCCGAGTAAGAGTTCACAATCTCATAATTTGAAAATCCACAAGGTTA-G------ 426
|||||| | ||||| |||||||||||||| ||||||||||||| |||||||| |
Sbjct 492 TCTTCTTCTAGTAAAAGTTCACAATCTCAAAATTTGAAAATCCGCAAGGTTAGGAATCAC 551
Query 427 A--AATTCTGGATTCAAGAGTAGGGATCAAAGTCCTAAGAGGACACAGGAT-C-CC-CCT 481
| ||||||||||||||||||||||||||||||||| |||||| | ||||| | || |||
Sbjct 552 AGGAATTCTGGATTCAAGAGTAGGGATCAAAGTCCTCAGAGGATAAAGGATCCTCCGCCT 611
Query 482 TTCGACATTTGTTCTTCAGTCCTC----G--AT--T-CAAGCATAAACGATTGGGCTTTG 532
|||||||| ||||||||||||||| | || | |||| ||||| |||||| ||||
Sbjct 612 TTCGACATATGTTCTTCAGTCCTCGAAAGAAATGATACAAGTATAAAAGATTGGATTTTG 671
Query 533 GCGGATGAAACAAACGGGGAAACTGTTGAAGTTAGTAATAAACACAGAGTTCTAAGGCCT 592
||||||||||||||| | |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 672 GCGGATGAAACAAACAGAGAAACTGTTGAAGTTAGTAATAAACACAAAGTTATAAGGCCT 731
Query 593 GGAATGGTGCTTCTTAAAGGCTTCCTTTCACATGATATACAGGTTGACATTGTGAAAACA 652
||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||||
Sbjct 732 GGAATGGTGCTTCTTAAAGACTTCCTTACGCCTGATATACAGGTTGACATTGTGAAAACA 791
Query 653 TGCCGAGAACTTGGTGTTAAGCCCGCAGGATTTTACCAACCGGGGTATAGAGTTGGTTCA 712
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 792 TGCCGAGAACTTGGTGTTAAGCCCACAGGATTTTACCAACCGGGGTATAGTGTTGGTTCA 851
Query 713 AAGCTTCATCTGCAAATGATGTGCCTTGGGAGAAACTGGGATCCACAGACCAAGTACAGT 772
|||||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||
Sbjct 852 AAGCTTCATCTGCAAATGATGTGCCTTGGGCGAAACTGGGATCCTCAGACTAAATACAGG 911
Query 773 AAAAACACTGACATAGATAGTAAAGCACCCGACATCCCTGTTGCATTTAGTGTCTTGGTA 832
|||||||||||||| |||||||||||||| || |||||||| |||||| ||||||||||
Sbjct 912 AAAAACACTGACATTGATAGTAAAGCACCAGAGATCCCTGTCACATTTAATGTCTTGGTA 971
Query 833 GAGGAGGCGATCCGGGAAGCACATGCTCTCATAGATAGAGAATCAGGAACAGAAGATGCG 892
|| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GAAAAGGCGATCCGAGAGGCACATGCTCTCATAGATAGAGAATCAGGAACAGAAGATGCG 1031
Query 893 GAGAGGATACTTCCAGTGATGTCACCAGACATTTGCATAGTCAACTTCTACTCAGAAACT 952
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1032 GAGAGGATACTTCCAGTGATGTCACCAGACATTTGCATAGTCAATTTCTACTCAGAAACT 1091
Query 953 GGAAGGCTTGGTCTCCATCAGGACCGTGACGAAAGCCAAGAGAGTATAGGAAAAGGGTTG 1012
||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 1092 GGAAGACTTGGTCTCCATCAGGACCGTGACGAAAGCGAAGAGAGTATAGCAAGAGGGTTG 1151
Query 1013 CCGATAGTCTCCTTCTCGATAGGTGATTCTGCAGAGTTCTTGTACGGAGAGAAGAGAGAC 1072
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CCGATAGTGTCCTTCTCCATAGGTGATTCTGCAGAGTTCTTGTACGGAGAGAAGAGAGAC 1211
Query 1073 GTAGAAGAAGCAGAAGGAGT 1092
||||||||||| |||||||
Sbjct 1212 GTAGAAGAAGCTCAAGGAGT 1231
Score = 172 bits (93), Expect = 5e-42
Identities = 107/114 (94%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1092 TCCATGGCGTCAAGTCCATCATACCAAACTCAGCTCCCATGTCTCTACTCAATGAGTCCA 1151
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1285 TCCATGGCGTCAAGTCAATCATACCAAACTCAGCTCCCATGTCTCTACTCAACGAGTCCA 1344
Query 1152 AGCTCCGAACCGGACGTCTCAACCTTACGTTTAGGCATTTCTAATCTTATTTCA 1205
|||||||||| ||||||||||| ||||| ||||||||||||||||| | |||||
Sbjct 1345 AGCTCCGAACAGGACGTCTCAATCTTACTTTTAGGCATTTCTAATCATCTTTCA 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5