BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939497
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34980.1 | Symbols: SLP2 | subtilisin-like serine protease 2... 556 5e-158
> AT4G34980.1 | Symbols: SLP2 | subtilisin-like serine protease
2 | chr4:16656691-16659339 REVERSE LENGTH=2649
Length=2649
Score = 556 bits (301), Expect = 5e-158
Identities = 396/439 (90%), Gaps = 17/439 (4%)
Strand=Plus/Plus
Query 1 GTCATGCTTTCAAAGCGAGTATGTCCGGTTACGCCTCCGGTGTAGCCAAAGGTGTTGCTC 60
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GTCACGCTTTTAAAGCGAGTATGTCCGGTTACGCCTCCGGTGTAGCCAAAGGTGTTGCTC 822
Query 61 CTAAAGCACGTATCGCCACCTACAAAGTCTGTTGGAAAGAATCCGGTTGTCTCGATTCCG 120
| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 823 CAAAAGCTCGTATCGCCGCCTACAAAGTCTGTTGGAAAGATTCCGGTTGTCTCGATTCCG 882
Query 121 ATATCCTCGCCGCTTTTGATGCGGCTAGT-AGAGACGGCGTCGACGTTATATCGATCTCA 179
|||| |||||||| |||||||| ||| || |||||||| |||||||||||||||||||||
Sbjct 883 ATATTCTCGCCGCCTTTGATGCCGCT-GTTAGAGACGGTGTCGACGTTATATCGATCTCA 941
Query 180 ATCGGTGGTGGTGACGGGATTACTTCTCCGTATTACCTCGATCCAATCGCTATAGGCTCA 239
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 942 ATCGGTGGTGGAGACGGGATTACTTCGCCGTATTACCTCGATCCAATCGCTATAGGCTCG 1001
Query 240 TACGGCGCCGCGTCGAAAGGAATCTCCGTTTCTTCTTCCGCCGGAAACGAAGGACCTA-C 298
||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||| |
Sbjct 1002 TACGGCGCCGCGTCGAAAGGAATCTTCGTCTCTTCCTCTGCCGGAAACGAAGGACCTAAC 1061
Query 299 ---A----A---AC---C-TCGCACCGTGGGTAACCACCGTTGGTGCTAGTACAATCGAT 344
| | || | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1062 GGTATGTCAGTTACGAACCTCGCGCCGTGGGTAACCACCGTTGGTGCTAGTACAATCGAT 1121
Query 345 CGGAATTTCCCGGCGGATGCAATTCTCGGTGACGGACATCGTCTCAGAGGCGTGTCTCTC 404
||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1122 CGGAATTTCCCAGCGGATGCTATTCTCGGCGACGGACATCGTCTCAGAGGAGTGTCTCTT 1181
Query 405 TACGCCGGAGTTCCGTTAA 423
||||| ||||| || ||||
Sbjct 1182 TACGCTGGAGTACCTTTAA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22067541811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5