BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939503
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01600.1 | Symbols: ATFER1, FER1 | ferretin 1 | chr5:227953-... 1480 0.0
AT5G01595.1 | Symbols: | other RNA | chr5:227024-230013 FORWAR... 436 1e-121
> AT5G01600.1 | Symbols: ATFER1, FER1 | ferretin 1 | chr5:227953-230051
REVERSE LENGTH=1421
Length=1421
Score = 1480 bits (801), Expect = 0.0
Identities = 913/966 (95%), Gaps = 12/966 (1%)
Strand=Plus/Plus
Query 6 CTACATTTTCCTACGATGGCCTCAAAGGCACTCTCTTCCTTCA---CCGCTAAGCCCGCT 62
||||||||||| |||||||||||||| |||||||| || |||| ||||||| ||||||
Sbjct 443 CTACATTTTCCAACGATGGCCTCAAACGCACTCTCGTCTTTCACCGCCGCTAATCCCGCT 502
Query 63 CTGTCTCCCAAGCCACTACTCCCTCACGGCGCCGCTTCTCCGCCTGTTTCTCTCGGATTC 122
|||||||| ||||||||||||||||||||| | ||||||||| | ||||||||||| |||
Sbjct 503 CTGTCTCCTAAGCCACTACTCCCTCACGGCTCTGCTTCTCCGTCGGTTTCTCTCGGCTTC 562
Query 123 TCCAGGAAAACTGGCGGCGGCAGAACAGTGGTCGTCGTTGCTGCCGCTACCGTTGACACA 182
||||||||| ||||||||||||| |||| | |||||||| || ||||| || ||||||
Sbjct 563 TCCAGGAAAGTTGGCGGCGGCAGAGCAGT-G--GTCGTTGCAGCGGCTACGGTGGACACA 619
Query 183 AACAACATGCCGATGACCGGAGTCGTGTTCCAGCCTTTCGAGGAGGTGAAGAAAGCCGAT 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 620 AACAACATGCCGATGACCGGAGTCGTGTTCCAGCCTTTCGAAGAGGTGAAGAAAGCCGAT 679
Query 243 CTGGCCATTCCAATCACATCTCATGCCTCCCTCGCTCGCCAGAGGTATGCCGACACTAGC 302
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||
Sbjct 680 CTGGCCATTCCAATCACATCTCATGCCTCTCTCGCTCGCCAGAGGTTTGCCGACGCTAGC 739
Query 303 GAGGCAGTCGTTAATGAGCAAATCAATGTGGAATACAACGTCTCCTATGTGTACCATTCA 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GAGGCAGTCATTAATGAGCAAATCAATGTGGAATACAACGTCTCCTATGTGTACCATTCA 799
Query 363 ATGTACGCATACTTTGACAGAGACAACGTTGCTCTTAAGGGACTTGCCAAATTTTTCAAG 422
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 800 ATGTACGCATACTTTGACAGAGACAACGTTGCTATGAAGGGACTAGCCAAATTTTTCAAG 859
Query 423 GAATCAAGTGAGGAAGAGAGAGGGCATGCTGAGAAGTTTATGGAGTACCAGAACCAAAGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GAATCAAGTGAGGAAGAGAGAGGGCATGCTGAGAAGTTTATGGAGTACCAGAACCAAAGA 919
Query 483 GGAGGAAGAGTGAAACTCCACCCAATCGTCTCACCTGTCTCAGAATTCGAACATGCTGAA 542
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 920 GGAGGAAGAGTGAAACTCCACCCTATCGTCTCACCTATCTCAGAATTCGAACATGCTGAA 979
Query 543 AAAGGAGATGCATTATATGCAATGGAGTTGGCTCTGTCTCTAGAGAAACTTACTAATGAG 602
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 980 AAAGGAGATGCTTTATATGCAATGGAGTTGGCTCTGTCTCTAGAGAAACTCACTAATGAG 1039
Query 603 AAGCTACTAAACGTTCACAGAGTGGCCTCAGAGAACAATGATCCCCAGTTAGCTGATTTC 662
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AAGCTTCTAAACGTTCACAAAGTGGCCTCAGAGAACAATGATCCCCAGTTAGCTGATTTC 1099
Query 663 GTTGAGACTGAATTTCTGGGAGAGCAGATTGAAGCAATCAAGAAGATCTCAGACTACATC 722
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 GTTGAGAGTGAATTTCTGGGAGAGCAGATTGAAGCAATCAAGAAGATCTCAGACTACATC 1159
Query 723 ACCCAGCTAAGGATGGTTGGCAAAGGCCACGGAGTTTGGCATTTCGACCAGATGCTTCTG 782
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 ACCCAGCTAAGGATGATCGGCAAAGGCCACGGAGTTTGGCATTTCGACCAGATGCTTCTG 1219
Query 783 AACTAGACT-GGACCTCTATAAGTTCACTTTCAGATGTCGACCAATGTTGGGGTTCAAAC 841
||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1220 AACTAGACTTGGACCTCTATAAGTTCACTTTCAGATG---ACCAATGTTGGGGTTAAAAC 1276
Query 842 AGAAGAACCCGAAGATTCTGTAAAAGCTTTAGGTTGGA-AGTTATGGACTAATAAGATTG 900
|||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||
Sbjct 1277 AGAAGAACCCGAAGATTCTGTAAAAGCTTTAGATTGAACA-TTATGGACTAATAAGATTG 1335
Query 901 TAGTAGTAAGCTTTGTGTTCAAGATGGTTTTTGTAATAACTTATTAAGCTTAATCAATAA 960
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1336 TAGTAGTAAGCTTTGTGTTCAAGATGGTTTTTGTAATAACTTCGTAAGCTTAATCAATGA 1395
Query 961 AGTTTT 966
||||||
Sbjct 1396 AGTTTT 1401
> AT5G01595.1 | Symbols: | other RNA | chr5:227024-230013 FORWARD
LENGTH=939
Length=939
Score = 436 bits (236), Expect = 1e-121
Identities = 297/326 (91%), Gaps = 6/326 (2%)
Strand=Plus/Minus
Query 6 CTACATTTTCCTACGATGGCCTCAAAGGCACTCTCTTCCTTCA---CCGCTAAGCCCGCT 62
||||||||||| |||||||||||||| |||||||| || |||| ||||||| ||||||
Sbjct 535 CTACATTTTCCAACGATGGCCTCAAACGCACTCTCGTCTTTCACCGCCGCTAATCCCGCT 476
Query 63 CTGTCTCCCAAGCCACTACTCCCTCACGGCGCCGCTTCTCCGCCTGTTTCTCTCGGATTC 122
|||||||| ||||||||||||||||||||| | ||||||||| | ||||||||||| |||
Sbjct 475 CTGTCTCCTAAGCCACTACTCCCTCACGGCTCTGCTTCTCCGTCGGTTTCTCTCGGCTTC 416
Query 123 TCCAGGAAAACTGGCGGCGGCAGAACAGTGGTCGTCGTTGCTGCCGCTACCGTTGACACA 182
||||||||| ||||||||||||| |||| | |||||||| || ||||| || ||||||
Sbjct 415 TCCAGGAAAGTTGGCGGCGGCAGAGCAGT-G--GTCGTTGCAGCGGCTACGGTGGACACA 359
Query 183 AACAACATGCCGATGACCGGAGTCGTGTTCCAGCCTTTCGAGGAGGTGAAGAAAGCCGAT 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 AACAACATGCCGATGACCGGAGTCGTGTTCCAGCCTTTCGAAGAGGTGAAGAAAGCCGAT 299
Query 243 CTGGCCATTCCAATCACATCTCATGCCTCCCTCGCTCGCCAGAGGTATGCCGACACTAGC 302
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||
Sbjct 298 CTGGCCATTCCAATCACATCTCATGCCTCTCTCGCTCGCCAGAGGTTTGCCGACGCTAGC 239
Query 303 GAGGCAGTCGTTAATGAGCAAATCAA 328
||||||||| ||||||||||||||||
Sbjct 238 GAGGCAGTCATTAATGAGCAAATCAA 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5