BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939504
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01590.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2547 0.0
> AT5G01590.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 60 Blast hits to 59 proteins in 31 species: Archae -
0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr5:224174-226926
FORWARD LENGTH=1965
Length=1965
Score = 2547 bits (1379), Expect = 0.0
Identities = 1542/1619 (95%), Gaps = 18/1619 (1%)
Strand=Plus/Plus
Query 1 GACTGTGTGTGTGTTCAACAATGTCGTCCATGAACTTCAATCCATTTCAAAACTGGTTCG 60
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 56 GACTGTATGTGTGTTCAACAATGTCGTCGATGAACTTCAATCCATTTCAAAACTGGTTCG 115
Query 61 AGAAACCGCCGAACCCAGTCCCTTCCATCAATTTCGTCTCGCTCGCTGATTCATTCTTCC 120
||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 116 AGAAACCACCGAACCCAGTCCCGTCCATCAACTTCGTCTCGCTCGCTGATTCCTTCTTTC 175
Query 121 CCAAGTCGCAGTCTCCGAATTTCGCTGCGATTGGCCTTCCTAAGTTCTCCAAGAAGCCCC 180
|||||||||||||||||||||||||| ||||||| ||||| || ||||| |||||| |||
Sbjct 176 CCAAGTCGCAGTCTCCGAATTTCGCTTCGATTGGACTTCCAAAATTCTCAAAGAAGTCCC 235
Query 181 CAAAACCCG-AA-A-CAGGAACCGACGAGCCAGGACCGTACAAGCAAATCGCCGAGCAGT 237
||||||||| || | ||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 236 CAAAACCCGAAACAGCAGGAACCGACGAACCAGGACCGTACAAGCAAATAGCAGAGCAGT 295
Query 238 TCTTATGGGAGTGTGAGAACATACCGGATTACAGGCACACTCCAGAAGTGGATAAGATTC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 296 TCTTATGGGAGTGTGAGAACATACCGGATTACAGGCACACTCCAGAAGTGGATAAGCTTC 355
Query 298 TCAACGAAGATCCAGTTTTCGAGAAGAAGGAGAATCCGAGCACAGACGAGATTGAAGCTG 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 356 TCAACGAAGATCCAGTTTTCGAGAAGAAGGAGAATCCGAGCACAGAAGAGATTGAAGCTG 415
Query 358 AGCAGAAATGGTGGGAGAGATTTCGAGCGAGTCCTGTGGTTCAGTTTATGACTCGCGCCG 417
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGCAGAAATGGTGGGAGAGTTTTCGAGCGAGTCCTGTGGTTCAGTTTATGACTCGCGCCG 475
Query 418 AGGAGATTGCGGACGATATGAACAAGATGGAGCTCGAGGATAACGACACGCCTTATCGGA 477
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGGAGATTGCCGACGATATGAACAAGATGGAGCTCGAGGATAACGACACGCCTTATCGGA 535
Query 478 AAGAAGACAAGGAATACTGGAGAGCCATTCCTCATGTGCCGGGCTTTGACGGGAGGCCGA 537
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 536 AAGAAGACAAGGATTACTGGAGAGCCATTCCTCATGTCCCGGGCTTTGACGGGAGGCCCA 595
Query 538 TGCCTAGGAAGGCGATTAAATCAAAGGAAGAGAGTGATGATAAGTTTTGGGATTTCATGA 597
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TGCCTAGGAAGGCGATCAAATCAAAGGAAGAGAGTGATGATAAGTTTTGGGATTTCATGA 655
Query 598 AACAGTTCCTCTTCGGGCTCTGGGGTTTCCGGCAACGTCCTTACCCGCCGGGTCGACCCA 657
||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 656 AACAGTTTCTCTTCGGCCTCTGGGGTTTCCGTCAACGTCCTTACCCGCCTGGTCGACCCA 715
Query 658 TAGACGTGGCTCAGGCTATTGGTTACAAACGGCTTGAGAAGCGCTATTATGACTTCATAA 717
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 716 TTGATGTGGCTCAGGCTATTGGTTACAAACGGCTCGAGAAGCGCTATTATGACTTCATAA 775
Query 718 TGAAGACCGGTGGTTGGTGGTATAAAGACCGACTTGGCCGTTCTAGAGGCCCTTGTGAGC 777
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TGAAGACTGGTGGTTGGTGGTATAAAGACCGACTTGGCCGTTCTAGAGGCCCTTGTGAGA 835
Query 778 TTATAACCCTTAAGACGGCTTATGGAGCTGGAATAATTGACAGAGATACTTTCATTTGGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTATAACCCTTAAGACGGCTTATGGAGCTGGAATAATTGACAGAGATACTTTCATTTGGG 895
Query 838 GCGAGGACATGGATGAATGGGCGCCTATTCACATGGTTTACGGTTTGGAACCTGCAATTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCGAGGACATGGATGAATGGGCGCCTATTCACATGGTTTACGGTTTGGAACCTGCAATTG 955
Query 898 CCACTTGGGAAGTGAGGCTTGGTGCAGCGGCAACGGCTTTCCTTCACAAACTCCAGAAGG 957
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 CAACTTGGGAAGTGAGGCTTGGTGCAGCGGCAACGGCTTTCCTACACAAACTCCAGAAGG 1015
Query 958 GAATACCACCATGGGTTCC-TCTAAAGGGACGAGAGCCAAAAACATACAAGCAGCTCCAA 1016
|||| ||||| |||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 1016 GAATTCCACCGTGGGTTCCAT-TAAAGGGACGAGAGCCAAAAACATACAAGCAGCTTCAA 1074
Query 1017 AAAGAAGCTATTGAGAGTAAGAAACGCGACATGGCAGTGCTCGAAGCAAATGATGGCGTT 1076
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1075 AAAGAAGCTATTGAGAGTAAGAAACGCGACATGGCAGTGCTTGAAGCAAATGGTGGCGTT 1134
Query 1077 TGGCCTGGAGTCAGAACTCCCAGCCACGCTCTGTTTCTCTGGGCGAGTGGGTCTGAATTA 1136
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1135 TGGCCTGGAGTCAGAACTCCCAGCCACGCTCTGTTTCTCTGGGCCAGTGGGTCTGAGTTA 1194
Query 1137 ACAACTGTACTGGAATCTGATCACATGCCGAACAAGTTCATCCCCAAACAACTACGACAA 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1195 ACAACTGTACTGGAATCTGATCACATGCCGAACAAGTTCATCCCCAAACAACTACGACTA 1254
Query 1197 GAGCTGGCCAAAGTAATACCAGGGTTAAGGCCATGGGAAGTGATAAGTATAGAGCAAGCT 1256
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1255 GAGTTGGCCAAAGTAATACCAGGGTTAAGGCCATGGGAAGTGATAAGTATCGAGCAAGCT 1314
Query 1257 ATGGATCAGATCAGCTATGGTGGAGAGTGGTACCGTGAGCCGCTTGGTACCTACACCACT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ATGGATCAGATCAGCTATGGTGGAGAGTGGTACCGTGAGCCGCTTGGTACCTACACCACT 1374
Query 1317 GGTCCTCCTTACATCAGAGAGTGGAATAGGAGTGTCATGAGGCTATTCCGGATTTTCTAC 1376
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 GGTCCTCCTTATATCAGAGAGTGGAATAGGAGTGTCATGAGGCTATTCCGGATTTTCTAC 1434
Query 1377 AACCTCAGTGTTCGAGTAGGCCAGAAGCTGGAGAGGACAGTCCCGGGGTTTGACACTATA 1436
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1435 AACCTGAGTGTTCGAGTAGGCCAGAAGCTGGAGAGGACAGTCCCGGGTTTTGACACTATA 1494
Query 1437 ATGGAAAAAGTTCAGAAAGATTACGACACTCGGATTGCTCGAAGGATGAAGCGGAGAGAG 1496
||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||||||
Sbjct 1495 ATGGACAAAGTTCAGAAAGATTATGACAAAAGGATTGCTCGGAGGATGAAGCGGAGAGAG 1554
Query 1497 GAGGAGCTGAGAAAAGAGGACCTGAAGCATTATTCCGGCCGTAGCGATGAAGATGAGGAG 1556
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1555 GAGGAGCTGAGAGAAGAGGACCTGAAGCATTATTCCGGCCGTACCGATGAAGATGAGGAG 1614
Query 1557 GAG-AAG-G-A------CGATGATAGCAACTCCAAATGATTGAAGTTGAAGCAAAGTCT 1606
||| ||| | | ||| ||||||||||||||| | || ||||||||||||||
Sbjct 1615 GAGGAAGAGGAGGAGGACGACGATAGCAACTCCAAAAAA--GA--TTGAAGCAAAGTCT 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79316861100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5