BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939512
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01510.1 | Symbols: RUS5 | Protein of unknown function, DUF6... 2575 0.0
> AT5G01510.1 | Symbols: RUS5 | Protein of unknown function, DUF647
| chr5:201606-205386 FORWARD LENGTH=1861
Length=1861
Score = 2575 bits (1394), Expect = 0.0
Identities = 1520/1579 (96%), Gaps = 16/1579 (1%)
Strand=Plus/Plus
Query 1 CTCCATAATATAATTTTCGT---CATGTACTGTACTTTACGATTTCCTTTGCCTCTTCAC 57
|||| ||| || |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 73 CTCCGTAAAATCATTTTCGTCGCCATGTACTGTACTTTGCGATTTCCTTTGCCTCTTCAC 132
Query 58 ATTCCCCAAACTCGAACAATGTCCTCCTCCTGTCAGCCGAAACGACGCCGTGTGGAGCAC 117
||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 133 ATTCCCCAAACTCGAACAATG---ACGTCCTGTCAGCCGAAACGACGCCGTGTTGAGCAC 189
Query 118 TTGCGGTGCTCTGCTCAGCC---TAGTCTTCGTGAAGATGACGAAGAGGCCGATGATAGG 174
|||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 190 TTGCGGTGCTCTGCTCAGCCTAGTAGTATTCGTGAAGATGACGAAGATGCCGATGATAGG 249
Query 175 AGTGTTGGAGTTGAAAGACGAATTTCGATTGTGGTGGAGAGATACGGAAATGGCACTTCA 234
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 AGAGTTGGAGTTGAAAGACGAATTTCGATTGTGGTGGAGAGATACGGAAATGGCACTTCA 309
Query 235 AAAAGATATTTTCTAGATGATGATGATGACTCCCCTTTACAAGGCTTTCTCGAGGAGCGT 294
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 310 AAAAGATATTTTCTAGATGATGATGAT---TCCCCTTTACAAGGCATTCTCGAGGAGCGT 366
Query 295 G-AACTTAAGCCTGATAACGATTCTCAGAGCTCTAATTCCTCTGAAACGAACACTCTTTG 353
| ||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 367 GAAAC-TAAGCCTGATAACAATTCTCAGAGCTCTAATTCCTCCGAAACGAACATTCTTTG 425
Query 354 GCTTCCAGATGTTGTCAAGGATTTTGTTTTCCCCACAGGCTTTCCTGGGTCTGTTTCAGA 413
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 426 GCTTCCAGATGTTGTCAGGGATTTTGTTTTCCCCTCAGGCTTTCCTGGGTCTGTTTCAGA 485
Query 414 TGATTACTTGGACTATATGCTGTGGCAGTTCCCTACCAATGTTACTGGCTGGATTTGTAA 473
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 486 TGATTACTTGGACTATATGCTGTGGCAGTTCCCAACCAATATTACTGGCTGGATTTGTAA 545
Query 474 TGTATTAGTCACGTCAAGTCTTCTCAAGGCGGTTGGCGTTGGCTCTTTCTCAGGAACTTc 533
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 546 TGTATTAGTCACGTCAAGTCTTCTCAAGGCGGTTGGGGTTGGCTCTTTCTCAGGAACTTC 605
Query 534 tgctgccgctactgctgctgcttctgctgcAGCCATCAGATGGGTCTCCAAGGATGGAAT 593
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 606 TGCTGCCGCTACTGCTGCTGCTTCTGCTGCAGCCATCAGATGGGTGTCCAAGGATGGAAT 665
Query 594 TGGAGCTCTTGGCCGTCTTCTTATTGGTGGACGTTTCGGTAGTCTTTTTGATGATGATCC 653
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 666 TGGAGCTCTTGGCCGTCTTCTTATTGGTGGACGTTTTGGTAGTCTTTTTGATGATGATCC 725
Query 654 TAAGCAATGGCGAATGTATGCTGATTTTATTGGCAGTGCTGGAAGCTTCTTTGATCTGGC 713
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 726 TAAGCAATGGCGCATGTATGCAGATTTTATTGGCAGTGCTGGAAGCTTCTTTGATTTGGC 785
Query 714 GACACAGCTATATCCATCCCAGTTCCTACTGTTGGCATCCACGGGAAATCTTGCCAAGGC 773
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 AACCCAGCTATATCCATCCCAGTTCCTACTGTTGGCATCCACGGGAAATCTTGCCAAGGC 845
Query 774 TGTGGCTAGAGGATTGAGAGACCCTTCATTCAGAGTGATTCAGAATCATTTTGCCATCTC 833
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 846 TGTGGCTAGAGGATTGAGAGACCCTTCATTCAGGGTGATTCAGAATCATTTCGCTATCTC 905
Query 834 AGGAAATCTTGGAGAGGTAGCAGCCAAGGAAGAAGTGTGGGAAGTTGCTGCGCAGCTAAT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AGGAAATCTTGGAGAGGTAGCAGCCAAGGAAGAAGTGTGGGAAGTTGCTGCGCAGCTAAT 965
Query 894 TGGTCTTGGTTTCGGCATTCTGATCATTGACACGCCGGGCCTTGTAAAGTCATTTCCGTT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGGTCTTGGTTTCGGCATTCTGATCATTGACACGCCGGGCCTTGTAAAGTCATTTCCGTT 1025
Query 954 TGTGTCACTTACATGGACGAGTGTTAGACTTGTTCACCTCTGGCTACGCCACCAGTCGCT 1013
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1026 TGTGTTACTTACATGGACGAGCATTAGACTTGTTCACCTCTGGCTACGCTACCAGTCGCT 1085
Query 1014 TGCAGTCCTACAATTTAACACGGTAAATCTCAAGCGTGCTCGTATCATAGTAGAATCTCA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 TGCAGTCCTACAATTTAACACGGTAAATCTCAAGCGTGCTCGTATCATAGTAGAATCTCA 1145
Query 1074 TGTTGTGCACTCAGTTGTACCAGGATATGTTGACTGCAACAAGCGAGAAAACATTTTGTT 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1146 TGTTGTGCACTCAGTTGTACCAGGATATGTTGACTGCAACAAGCGAGAAAACATTTTGCT 1205
Query 1134 GTGGCAGAGGTTCATGAAACCTCGGATCATCTTTGGTGTATCCCTTGAAGAAGT-GTCTG 1192
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1206 GTGGCAGAGGTTCATGAAACCTCGAATCATCTTTGGTGTATCCCTTGAAGA-GTTGTCTG 1264
Query 1193 GTCTGGAGAAATCTGTTTCTAAGGTCAAGGCACTCCTTAAGATGTACACAAAGGAGAAAT 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GTCTGGAGAAATCTGTTTCTAAGGTCAAGGCACTCCTTAAGATGTACACAAAGGAGAAAT 1324
Query 1253 ATATTCTTACGTTGAATAAGTTGAACAATGATACTGAGTTTTCTGTGTCTTTTAAGGTGA 1312
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1325 ATATTCTTACGTTGAATAAGTTGAACAAGGATACTGAGTTTTCTGTGTCCTTTAAGGTGA 1384
Query 1313 ATGCCACAAGCAGAGACGTGTTGAGATGTCTTTGGCAAGCATATTGGTTAGAGGAGAACA 1372
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1385 ATGCCACAAGCAGAGACGTGTTGAGATGCCTTTGGCAAGCATATTGGTTAGAGGAGAACA 1444
Query 1373 TGGAAGAAAGCTTTAAAGACAAGGATAGTGTGTTCCACTGGCTGAAGCAAAGCTTGTCGG 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TGGAAGAAAGCTTTAAAGACAAGGATAGTGTGTTCCACTGGCTGAAGCAAAGCTTGTCGG 1504
Query 1433 AGATGGACAACAAGTTTGATGATTTCTTGTTCAAGTTGGATACTGCTGGATGGAATCTAC 1492
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1505 AGATGGACAACAAGTTTGATGATTTCTTGTTCAAATTGGATACTGCTGGATGGAATCTAC 1564
Query 1493 GTGAATCTAACTTGAAGATTCCCAACCAAGTTCTCATCGACCAGGAATCTATCCCTCTCT 1552
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1565 GTGAATCTAACTTGAAGGTTCCCAACCAAGTTCTCATAGACCAGGAATCTATCCCTTTCT 1624
Query 1553 AACATTCGATTGATTGATT 1571
|||| ||||||||||||||
Sbjct 1625 AACACTCGATTGATTGATT 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5