BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939516

Length=652
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01480.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   291    8e-78


> AT5G01480.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr5:192990-194231 FORWARD LENGTH=1242
Length=1242

 Score =  291 bits (157),  Expect = 8e-78
 Identities = 314/387 (81%), Gaps = 22/387 (6%)
 Strand=Plus/Plus

Query  278  CTACCACAAAGAATGTGTTGAGTCTCCTTCCAAGTTCCATTCCTCTGATCATCCAAAACA  337
            |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||
Sbjct  291  CTACCACAAAGAATGTGTTGAGTCTCCTTCCGTGTTTCATTCCTCTGATCATCCAAAACA  350

Query  338  TCCACTCCAACTTGTTTGGTTTCCCGGA-A-ATC----GGAG-ACAACATCAAAAACAAT  390
            ||| || |||||| | ||| ||||| || |  ||    | || | ||| | | |||| ||
Sbjct  351  TCCTCTTCAACTTCTCTGGATTCCC-GACATGTCTTTAGAAGAAGAACGTGATAAACGAT  409

Query  391  GTTGTTCTTGTAGACGTTATCG-AGGCCG-GCTACTTTACTATTGCTCTATTTGCGATTT  448
            |||||||||||| ||| |  || | | ||  ||| |||||||||||||||||||||||||
Sbjct  410  GTTGTTCTTGTAAACG-TGGCGTA-GACGCACTATTTTACTATTGCTCTATTTGCGATTT  467

Query  449  TTCACTCGATCCAGTGTGTGTGGGAAAACCAACATCCCTTATTATAGACAATCCAAAAAG  508
            | || || ||   |  |||| |||||| ||||||||||  |  || ||||||||||||||
Sbjct  468  TGCAGTCCATATGGCATGTGCGGGAAATCCAACATCCCCAACCATTGACAATCCAAAAAG  527

Query  509  GCATAAGCATACCCTCCATTACTTTCCAAG-AATATCTGCTTTGGTTTGCGACGTGTGTG  567
            ||||||||||||||| ||||||||||| || || ||| | | || ||||||| || ||||
Sbjct  528  GCATAAGCATACCCTTCATTACTTTCCCAGGAA-ATCCGGTCTGTTTTGCGATGTTTGTG  586

Query  568  GGTTGGAGGGTC-ATAT-TGATTACTTATACGTATGTCTCCTATGCGCGCGATTTCATTG  625
             ||||| ||  | || | |||||||||||| |||||||||||||| |    |||||||||
Sbjct  587  CGTTGGTGGA-CGAT-TCTGATTACTTATATGTATGTCTCCTATGTG----ATTTCATTG  640

Query  626  TCCATAAACGATGTGTTTACTTCCCAT  652
            |||||||||||||||| ||||| ||||
Sbjct  641  TCCATAAACGATGTGTCTACTTACCAT  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31496810169


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5