BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939518
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01460.1 | Symbols: | LMBR1-like membrane protein | chr5:18... 2937 0.0
AT3G08930.1 | Symbols: | LMBR1-like membrane protein | chr3:27... 1954 0.0
> AT5G01460.1 | Symbols: | LMBR1-like membrane protein | chr5:186694-190457
FORWARD LENGTH=2108
Length=2108
Score = 2937 bits (1590), Expect = 0.0
Identities = 1644/1671 (98%), Gaps = 0/1671 (0%)
Strand=Plus/Plus
Query 4 CTCGTACATTGCACGCGATGGGGGATTTCAATCTCGCTCTCGTGATTGTTGCGATCGTAG 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 113 CTCGTACATTGCACGCGATGGGAGATTTCAATCTCGCTCTCGTGATTGTTGCGATCGTAG 172
Query 64 TTTGCGTAATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCCAGATG 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TTTGCGTCATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCCAGATG 232
Query 124 ATGCGAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGGTTTATCGATTGCTATGA 183
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 233 ATGCAAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGGTTTATCCATTGCTATGA 292
Query 184 TCTCCATTCTCATGTTACCGGCGGATGTGGCAAACCGGCATGCTTGTCGACATTCGATTT 243
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 293 TCTCTATTCTCATGTTACCGGCGGATGTGGCTAACCGGCATGCTTGTCGACATTCGATTT 352
Query 244 ATAATGGCGCTTGTAATCTCACCTTACCTATGAAGGAGCTTTGGCTTGCCGTTTACATTG 303
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 353 ACAACGGCGCTTGTAATCTCACCTTACCTATGAAGGATCTTTGGCTTGCCGTTTACATTG 412
Query 304 TCGACGCTGTGCTTGTATTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACC 363
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACC 472
Query 364 AGGACAAGGCTCTTGGGAAGAGGATAAAAAGTGCTTTGATTTGGGTGGTTACTACAGCTG 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 473 AGGACAAGGCTCTTGGGAAGAGGATAAAGAGTGCTTTGATTTGGGTGGTTACTACAGCTG 532
Query 424 TTGTTTGTGCTCTGGTGCTTGGAATTTTATACGGAGTCATTGGAAAGGTGGACTTCTCTG 483
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 533 TTGTTTGTGCTCTGGTTCTTGGAATTTTATACGGAGTCATTGGGAAGGTGGACTTCTCTG 592
Query 484 TAAGGCACTTATCTTCTGCCACGACGACTTTCCCTACTTCATGGCAGTTTTCAAATAATC 543
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 593 TAAGGCACTTGTCTTCTGCCACGACTACTTTCCCTACTTCATGGCAGTTTTCAAATAATC 652
Query 544 AACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGCGTCTG 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGCGTCTG 712
Query 604 AAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCG 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AAAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCG 772
Query 664 TTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCTTGGGCC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCTTGGGCC 832
Query 724 TTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTATATAAAGG 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTATATAAAGG 892
Query 784 AAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACC 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACC 952
Query 844 AGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAA 1012
Query 904 AGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCCGCAAGGAG 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCCGCAAGGAG 1072
Query 964 AGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTTTATTCTTG 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1073 AGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTTTGTTCTTG 1132
Query 1024 GAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTG 1192
Query 1084 TTGACCCTCCCCTCTCTCCTTTTCTTAATGAAGTTTTCATCAAACTGGATGACGTCTGGG 1143
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1193 TTGACCCTCCCCTCTCTCCTTTTCTGAATGAAGTTTTCATCAAACTGGATGACGTCTGGG 1252
Query 1144 GTCTTCTGGGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTG 1203
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GTCTTCTTGGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTG 1312
Query 1204 CTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCTATGAAATGGG 1263
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1313 CTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAATGGG 1372
Query 1264 GAGCCACTCTTATGAACTCTTTTCTCTTCAATGTCGGTCTCATTCTCCTCTGTTCTATCA 1323
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1373 GAGCCACTCTTATGAACTCTTTTCTCTTTAATGTCGGTCTCATTCTCCTCTGTTCTATCA 1432
Query 1324 GTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCGCCGCTCAGG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCGCCGCTCAGG 1492
Query 1384 AGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACAAGTACAATG 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 AGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACAAGTACAATG 1552
Query 1444 TGTTCCAGATCGGGTTTGTTGTCCTCGCTGGACTGACCTTTTTATATTACATAGCCTTTG 1503
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1553 TGTTCCAGATCGGGTTTGTTGTCCTCGCTGGATTGACCTTTTTATATTACATTGCCTTTG 1612
Query 1504 GATGGAGAAGAAAAAAGCCGAGCGGTAGATTCCAGCTCTCTACCTAATGTAAATCTCTTC 1563
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1613 GATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGTAAATCTCTTC 1672
Query 1564 TTTTGATTTTATCCTTTTTGTTTCCTCGTCTTTGGGATCGATCGCGTGCCACTGAGGATT 1623
||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1673 TTTTGATTTTATCGTTTATGTTTCCTCGTCTCTGGGATCGATCGCGTGCCACTGAGGATT 1732
Query 1624 GCTGTGTCCACAATTATACCGAGATTGGTCTCATGATCTGTGCAAGTGGTC 1674
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 GCTGTGTCCACAATTATACCGAGATTGGTCTCATGATCTGTGCAAGTGGTC 1783
> AT3G08930.1 | Symbols: | LMBR1-like membrane protein | chr3:2713398-2717318
FORWARD LENGTH=1954
Length=1954
Score = 1954 bits (1058), Expect = 0.0
Identities = 1390/1554 (89%), Gaps = 8/1554 (1%)
Strand=Plus/Plus
Query 7 GTACATTGCACGCGATGGGGGATTTCAATCTCGCTCTCGTGATTGTTGCGATCGTAGTTT 66
||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||| ||||
Sbjct 151 GTACATTGCACACGATGGGCGATTTCAACCTCGCTCTCGTGATTGTCGCGATCGTTGTTT 210
Query 67 GCGTAATTGTTTTCATCTCCAGTATCTACCTCCTCGTCAACTATCAGCATCCAGATGATG 126
|||| || || |||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct 211 GCGTCATCGTATTCATCTCTAGCATCTATCTTCTCGTCAACTATCAGCATCCAGATGATG 270
Query 127 CGAACCAGGCTTATTTCCCCAAATTCGTTGTTGTTTTTGG-TTTATCGATTGCTATGATC 185
| |||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 271 CAAACCAGGCTTATTTCCCCAAATTCGTCGTTGTTTTTGGCCTT-TCTATTGCTATGATC 329
Query 186 TCCATTCTCATGTTACCGGCGGATGTGGCAAACCGGCATGCTTGTCGACATTCGATTTAT 245
|| ||||||||||||||||| |||||||| || |||||||||||||||||| | || ||
Sbjct 330 TCGATTCTCATGTTACCGGCTGATGTGGCCAATCGGCATGCTTGTCGACATGCTATATAC 389
Query 246 AATGGCGCTTGTAATCTCACCTTACCTATGAAGGAGCTTTGGCTTGCCGTTTACATTGTC 305
||||| ||||| ||||||||||| || |||||||| ||||||||||| |||| || ||
Sbjct 390 AATGGAGCTTGCAATCTCACCTTGCCCATGAAGGATCTTTGGCTTGCTATTTATATCGTG 449
Query 306 GACGCTGTGCTTGTATTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAG 365
|||||| | || || ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 450 GACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAG 509
Query 366 GACAAGGCTCTTGGGAAGAGGATAAAAAGTGCTTTGATTTGGGTGGTTACTACAGCTGTT 425
|||||| ||||||| ||||||||||||||||| || |||||||| ||||| || ||||||
Sbjct 510 GACAAGACTCTTGGAAAGAGGATAAAAAGTGCCTTAATTTGGGTAGTTACCACGGCTGTT 569
Query 426 GTTTGTGCTCTGGTGCTTGGAATTTTATACGGAGTCATTGGAAAGGTGGACTTCTCTGTA 485
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 570 GTTTGTGCTCTGGTGCTTGGAATTTTATATGGTGTCATTGGAAAGGTGGACTTCTCGGTC 629
Query 486 AGGCACTTATCTTCTGCCACGA-CGACTTTCCCTACTTCATGGCAGTTTTCAAATAATCA 544
||||| || |||||||||| | | |||||||||||||| |||||||||||||||| |||
Sbjct 630 AGGCATTTGGCTTCTGCCAC-ATCCACTTTCCCTACTTCCTGGCAGTTTTCAAATACTCA 688
Query 545 ACCTTGCATTGGTAACACTGCTCGTCAGTGCTCAGCATATACAGCTAATGCTGCGTCTGA 604
||| ||||| |||||||||||||| ||||||||||||| |||||||||| | | |||||
Sbjct 689 ACCATGCATAGGTAACACTGCTCGCCAGTGCTCAGCATTTACAGCTAATCCCACATCTGA 748
Query 605 -AAAGACATGGTCCATGCGTACTACGTTTCCAGAATATGTTGTTGCTCTTGCTACAATCG 663
||| |||||| | ||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 749 GAAA-ACATGGACTATGCGTACTACTTTTCCAGAATATGTTGTTGCTCTTGCGACAATTG 807
Query 664 TTGGGTCAGTGCTCTTCACGATATTTGGTGGTGTTGGTATTGCTTGCCTACCCTTGGGCC 723
|||||||||| || ||||||||||||||||||||||||||||| || ||||| || || |
Sbjct 808 TTGGGTCAGTTCTTTTCACGATATTTGGTGGTGTTGGTATTGCATGTCTACCATTAGGAC 867
Query 724 TTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGGTCACAGTATATAAAGG 783
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 868 TTATCACTGCATTCATCAGGCGACCAAAGGCTGTTATCACTCGATCACAATATATAAAGG 927
Query 784 AAGCAACTGAACTAGGTAAAAAGGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACC 843
| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct 928 AGGCAACCGAACTAGGTAAAAAGGCAAGAGAACTAAAGAAAGCAGCTGATGGACTTCATC 987
Query 844 AGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAA 903
|||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 988 AGGAAGAAAGAAGTGGTGCTAAGGGCAGGAAATGGCGGAAAAATGTGAAAGCAGTTGAAA 1047
Query 904 AGGAGTTGCTCCAATTGGAAGAAGATGTGAACCTCTTAGAAGAGATGTATCCGCAAGGAG 963
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1048 AGGAGTTGCTCCAATTGGAGGAAGATGTGAACCTCTTAGAAGAGATGTATCCTCAAGGAG 1107
Query 964 AGCAGGCAGAGACTGCTTGGGCCTTCACTGTCCTGGGATACTTGGCCAAGTTTATTCTTG 1023
|||||||||| ||||| ||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1108 AGCAGGCAGAAACTGCATGGGCTTTCACTGTGCTCGGATACTTGGCCAAGTTTATTCTTG 1167
Query 1024 GAATCTTAGGATTAATTGTTTCTGTGGCTTGGATTGCTCACATCATCATATATCTACTTG 1083
||||| ||||||| || ||||| | |||||| |||| |||||||||||||||||||| |
Sbjct 1168 GAATCGTAGGATTGATCGTTTCCATTGCTTGGGTTGCACACATCATCATATATCTACTCG 1227
Query 1084 TTGACCCTCCCCTCTCTCCTTTTCTTAATGAAGTTTTCATCAAACTGGATGACGTCTGGG 1143
| |||||||| ||||| ||||||||||| || |||||||| || || ||||| || ||||
Sbjct 1228 TCGACCCTCCTCTCTCCCCTTTTCTTAACGAGGTTTTCATTAAGCTTGATGATGTTTGGG 1287
Query 1144 GTCTTCTGGGCACAGCTGCCTTTGCTTTCTTCTGTTTCTATCTCCTACTTGCTGTTATTG 1203
||||| | ||||| |||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1288 GTCTTTTAGGCACTGCTGCCTTTGCTTTCTTCTGTTTCTACCTTCTACTTGCTGTTATCG 1347
Query 1204 CTGGGGCAATGATGCTTGGTTTGAAGCTGGTCTTCATTACCATTCATCCTATGAAATGGG 1263
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1348 CTGGGGCAATGATGCTGGGTTTGAAGCTGGTCTTCATTACCATTCATCCAATGAAATGGG 1407
Query 1264 GAGCCACTCTTATGAACTCTTTTCTCTTCAATGTCGGTCTCATTCTCCTCTGTTCTATCA 1323
|||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||| ||||
Sbjct 1408 GAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCA 1467
Query 1324 GTGTGATTCAATTCTGCGCCACTGCATTTGGATATTATGCTCAAGCCACCGCCGCTCAGG 1383
| ||||||||||| || |||||||||||||||||||| ||||||||||| || || ||||
Sbjct 1468 GCGTGATTCAATTTTGTGCCACTGCATTTGGATATTACGCTCAAGCCACTGCTGCCCAGG 1527
Query 1384 AGATATTTGGCCACACTTTGCAGTCCCTTCGCGGTATTAAGTACCTCTACAAGTACAATG 1443
|||||||||||||||| |||||||||||| | || ||||||||||| |||||||||||||
Sbjct 1528 AGATATTTGGCCACACATTGCAGTCCCTTAGAGGAATTAAGTACCTTTACAAGTACAATG 1587
Query 1444 TGTTCCAGATCGGGTTTGTTGTCCTCGCTGGACTGACCTTTT-TATATTACATAGCCTTT 1502
||||||| |||||||||||| |||| ||||||||||| ||| |||||||||| ||||||
Sbjct 1588 TGTTCCAAATCGGGTTTGTTATCCTGGCTGGACTGAC-TTTCCTATATTACATTGCCTTT 1646
Query 1503 GGATGGAGAAGAAAAAAGCCGAGCGGTAGATTCCAGCTCTCTACCTAATGTAAA 1556
||||||||||||||||| | || || | |||||||||||| | |||||||||
Sbjct 1647 GGATGGAGAAGAAAAAAAACTAGTGGCCGTTTCCAGCTCTCTTCTTAATGTAAA 1700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5