BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939520

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01445.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   283    6e-76


> AT5G01445.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; Has 5 Blast hits to 5 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr5:181877-182581 REVERSE LENGTH=533
Length=533

 Score =  283 bits (153),  Expect = 6e-76
 Identities = 266/315 (84%), Gaps = 29/315 (9%)
 Strand=Plus/Plus

Query  3    GGCACGGAGAGCAATAATAATGGGTAGAATTTTTCGCCAATC-CGCATACAGAGCCTCTC  61
            ||||||||||||   ||||||||||||||||| | ||| ||| ||||||||||| | |||
Sbjct  40   GGCACGGAGAGC---AATAATGGGTAGAATTTAT-GCCCATCACGCATACAGAG-C-CTC  93

Query  62   TTGCAGATTATGATCCACCTCAAATTCGTAGCTGCGTTTTCAGACTTCCAGTG-GAAAGT  120
            ||     || ||   |  ||||||||| || |||||||| |||||||| |||| | ||||
Sbjct  94   TT-----TT-TG---C-TCTCAAATTCATATCTGCGTTTCCAGACTTCAAGTGCG-AAGT  142

Query  121  TATATTACACATCCGCGTTTCCCCCGCCGCTATGATTTTGAGGAAAAGTTGTCGCCTGAT  180
            |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  143  TATACTACAAATCCGCGTTTCGCCCGCCGCTATGATTTTGAGGAAAAGTTGTCGCCTGAT  202

Query  181  GTTACTGAGTCGCAGGAAAAGTTGTCG-C-C-TGATGTTAGAGAGTCGTCGACAAGCAAT  237
            ||||||||||| ||||||||||||| | | | ||||||||| || || |||||||||  |
Sbjct  203  GTTACTGAGTCACAGGAAAAGTTGTTGTCACCTGATGTTAGTGACTCTTCGACAAGCG-T  261

Query  238  TTAGGTAAGCAGCTTCAATCAAGTTCCAAGATGCGATTCCTC-ACCAAGCGCAAAGCTTT  296
              || ||||||| ||||||||||||| ||||||||||||||| || |||| |||||||||
Sbjct  262  --AGCTAAGCAGTTTCAATCAAGTTCAAAGATGCGATTCCTCCAC-AAGCACAAAGCTTT  318

Query  297  TTAAAA-GAAGAAGA  310
            | |||| ||||||||
Sbjct  319  T-AAAATGAAGAAGA  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14879253704


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5