BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939525
Length=521
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04720.1 | Symbols: CPK21 | calcium-dependent protein kinase... 276 2e-73
AT1G66750.1 | Symbols: CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2, CAK4... 276 2e-73
AT4G04740.2 | Symbols: CPK23 | calcium-dependent protein kinase... 220 8e-57
AT4G21940.2 | Symbols: CPK15 | calcium-dependent protein kinase... 215 4e-55
AT5G60620.1 | Symbols: GPAT9 | glycerol-3-phosphate acyltransfe... 196 1e-49
AT2G17290.1 | Symbols: CPK6, ATCDPK3, ATCPK6 | Calcium-dependen... 86.1 3e-16
> AT4G04720.1 | Symbols: CPK21 | calcium-dependent protein kinase
21 | chr4:2394458-2397759 REVERSE LENGTH=2083
Length=2083
Score = 276 bits (149), Expect = 2e-73
Identities = 161/167 (96%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 8 AGAGAGAGATTCAGATAATGCAGTATTTGTCTGGACAACCAAATATTGTTGAGATTAAAG 67
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 505 AGAGAGAGATTCAGATAATGCAGTATTTGTCTGGACAACCTAACATTGTTGAGATCAAAG 564
Query 68 GTGCTTATGAATATAGACAATCTGTGCATTTGGTTATGGAGTTGTGTGCTGGTGGTGAGT 127
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 565 GTGCTTATGAAGATAGACAATCTATACATTTGGTTATGGAGTTGTGTGCTGGTGGTGAGT 624
Query 128 TGTTTGATAGGATTATAGCTCAAGGTCATTACTCTGAGAGAGCTGCT 174
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TGTTTGATAGGATTATAGCTCAAGGTCATTACTCTGAGAGAGCTGCT 671
> AT1G66750.1 | Symbols: CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2, CAK4
| CDK-activating kinase 4 | chr1:24894715-24897253 FORWARD
LENGTH=1345
Length=1345
Score = 276 bits (149), Expect = 2e-73
Identities = 170/180 (94%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 175 TATGGAGCAGGAGTTGATGTCTGGGCTGCAGGCTGTATCTTTGCTGAGCTATTACTTCGT 234
|||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||
Sbjct 622 TATGGAGCAGGAGTTGATGTTTGGGCTGCAGGCTGTATTTTTGCTGAGTTACTACTTCGT 681
Query 235 AGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTTAGGAA-GATCTTTCAAGCCTT 293
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct 682 AGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTT-GGAAAGATCTTTCAAGCGTT 740
Query 294 TGGAACTCCAGTACCTTCTCAATGGTATGACATGATCTATCTCCCAGACTACATGGAATT 353
||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 741 TGGTACTCCAGTACCTTCCCAATGGTCTGACATGATCTATCTCCCAGACTACATGGAATT 800
> AT4G04740.2 | Symbols: CPK23 | calcium-dependent protein kinase
23 | chr4:2403609-2408737 REVERSE LENGTH=2518
Length=2518
Score = 220 bits (119), Expect = 8e-57
Identities = 151/167 (90%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 8 AGAGAGAGATTCAGATAATGCAGTATTTGTCTGGACAACCAAATATTGTTGAGATTAAAG 67
||| |||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 588 AGACAGAGATTCAGATCATGCAGCATTTGTCTGGACAACCAAACGTTGTTGAGATCAAAG 647
Query 68 GTGCTTATGAATATAGACAATCTGTGCATTTGGTTATGGAGTTGTGTGCTGGTGGTGAGT 127
|| |||||||| | ||||| ||||| |||||||| ||||| || ||||| ||||| ||||
Sbjct 648 GTTCTTATGAAGACAGACATTCTGTACATTTGGTAATGGAATTATGTGCCGGTGGAGAGT 707
Query 128 TGTTTGATAGGATTATAGCTCAAGGTCATTACTCTGAGAGAGCTGCT 174
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGTTTGATAGGATTATAGCTCAAGGTCATTACTCTGAGAGAGCTGCT 754
> AT4G21940.2 | Symbols: CPK15 | calcium-dependent protein kinase
15 | chr4:11640802-11643762 FORWARD LENGTH=2006
Length=2006
Score = 215 bits (116), Expect = 4e-55
Identities = 152/169 (90%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 8 AGAGAGAGATTCAGATAATGCAGTATTTGTCTGGACAACCA-AATATTGTTGAGATTAAA 66
|||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||
Sbjct 488 AGAGAGAGATTCAGATAATGCAGTATTTGTCTGGACAAG-AGAACATTGTTGAGATCAAA 546
Query 67 GGTGCTTATGAATATAGACAATCTG-TGCATTTGGTTATGGAGTTGTGTGCTGGTGGTGA 125
|||||||||||| |||||||||| | | |||||||| ||||||||||||| |||| ||||
Sbjct 547 GGTGCTTATGAAGATAGACAATC-GATACATTTGGTGATGGAGTTGTGTGGTGGTAGTGA 605
Query 126 GTTGTTTGATAGGATTATAGCTCAAGGTCATTACTCTGAGAGAGCTGCT 174
||||| |||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 606 ATTGTTCGATAGGATTATAGCTCAAGGACATTACTCTGAGAAAGCAGCT 654
> AT5G60620.1 | Symbols: GPAT9 | glycerol-3-phosphate acyltransferase
9 | chr5:24367198-24369790 FORWARD LENGTH=1342
Length=1342
Score = 196 bits (106), Expect = 1e-49
Identities = 116/121 (96%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 364 GTGTGGTACTTGGAACCTCAAACTATAAGGCCCGGTGAAACAGGGATTGAGTTTGCAGAG 423
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 990 GTGTGGTACTTGGAACCACAAACCATAAGGCCCGGTGAAACAGGAATTGAATTTGCAGAG 1049
Query 424 AGGGTAAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATAC 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 AGGGTCAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATAC 1109
Query 484 T 484
|
Sbjct 1110 T 1110
> AT2G17290.1 | Symbols: CPK6, ATCDPK3, ATCPK6 | Calcium-dependent
protein kinase family protein | chr2:7516415-7519633 FORWARD
LENGTH=2332
Length=2332
Score = 86.1 bits (46), Expect = 3e-16
Identities = 124/159 (78%), Gaps = 16/159 (10%)
Strand=Plus/Plus
Query 9 GAGAGAGATTCAGATAATGCAGT-ATTT-GTCTGGACAACCA-AATATTGTTGA-GATTA 64
||| ||||||||||| ||||| | |||| | |||| | || | ||||||||| | ||||
Sbjct 696 GAGGGAGATTCAGATTATGCA-TCATTTAG-CTGGTC-ACAAGAATATTGTT-ACTATTA 751
Query 65 AAGGTGCTTATGAATATAGACAATCTGTGCA-TTTGGTTATGGAG-TTGTGTGCTGGTGG 122
|||| |||||||| || | ||| || || || |||||| || |||||||||||
Sbjct 752 AAGGAGCTTATGAGGATCCTTTGTATGTTCACATT-GTGATGGAGCTT-TGTGCTGGTGG 809
Query 123 TGAGTTGTTTGATAGGATTATAGC-TCA-AGGTCATTAC 159
||||||||||||||||||||| | | | ||||||||||
Sbjct 810 TGAGTTGTTTGATAGGATTATT-CAT-AGAGGTCATTAC 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24916136912
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5