BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939531
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01370.1 | Symbols: ACI1 | ALC-interacting protein 1 | chr5:... 2193 0.0
> AT5G01370.1 | Symbols: ACI1 | ALC-interacting protein 1 | chr5:152530-154467
FORWARD LENGTH=1501
Length=1501
Score = 2193 bits (1187), Expect = 0.0
Identities = 1285/1331 (97%), Gaps = 12/1331 (1%)
Strand=Plus/Plus
Query 1 TCATCATCATCAGCCATCACCATGACCCAACGAGCCAACCCTAAGACCGGCTGCCTCACG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 TCATCATTATCAGCCATCACCATGACCCAACGAGCCAACCCTAAGACCGGCTGCCTCACG 84
Query 61 GCGGTAGTTCGCCGTCTTCTATGCTCCGGTAGCCAACAAACTCACCCTTCCGACAACATT 120
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 85 GCGGTAGTCCGCCGTCTTCTATGCTCTGGTAGCCAACAGACTCACCCTTCCGACAACATC 144
Query 121 CTCGACTCTGACGAAACACTCCAACTACTAATCCCTTACGAAGAAATCGAAGAGCCAAAG 180
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 145 CTCGACTCTGACGAAACACTCCAACTACTAATCTCTTACGAAGAAAACGAAGAGCCAAAG 204
Query 181 AAAGAGATCAAAACCGAAACCGAAACCCAAAACGACGACGTCTCTCTTCACCCTCCACCA 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 205 AAAGAGATCAAAACCGAAACCGAAACCCAAAACGATGACGTCTCTCTTCACCCT---CCA 261
Query 241 CCACCTCCTCCTCCTCCCAACGTTGTAGCCAAACTCATGGGGCTAGATCATCCTGCACCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 262 CCACCTCCTCCTCCTCCCAACGTTGTAGCCAAACTCATGGGGCTAGATCATCCCGCACCC 321
Query 301 GGATCAAAACGGTTCCGGTACTTTGACGATTCCGGTTCGGCTGTCACAAGGAGCAAATCG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 322 GGATCAAAACGGTTCCGGTACTTTGATGATTCCGGTTCGGCTGTCACAAGGAGCAAATCG 381
Query 361 GTTAACTTCATGGACTACATCCTAAGAGGTCACGAGGAAGAAGAAGAAGATGAAGACGAG 420
||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 382 GTTAACTTCATGGACTACATCCTAAAAGGTCACGAGGAAGAAGAAGAAAACGAAGACGAG 441
Query 421 AAAGACGGTCAACGTCAGTGCCGGAGAGTCAAAGCTTCCGTTTCTTTCCGTGAGATAGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AAAGACGGTCAACGTCAGTGCCGGAGAGTCAAAGCTTCCGTTTCTTTCCGTGAGATAGTC 501
Query 481 CCAACCTCGGCGAGATGGAGCTCTAATAACCAACAAAAGAAACATGATTTCTTGCTTTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 502 CCAACCTCGGCGAGATGGAGCTCTAATAACCAACAAAAGAAACATGATTTCCTGCTGTTG 561
Query 541 TATCTCGACAAGCTCGACGAGAAGAGGGAACTTGTCGGATCATCGTCTTTTTCGAGGTCT 600
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 562 TATCTTGACAAGCTTGACGAGAAGAGAGAACTTGTCGGATCATCGTCTTTTTCGAGGTCT 621
Query 601 AAAAGGTTCGAGAAGGTTGTGGAAGATTCCAAGAAGCCGCCATTGCCA-CTTC--CGGTG 657
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 622 AAAAGGTTCGAGAAGGTTGTGGAAGATTCCAAGAAGCCGCCATTGCCACCTTCGGCGCCG 681
Query 658 AAGAAGAAGGAGAACGAGAAAGTTGCTAAGAAGTTTAAAGATGAGCCGAGGAAAGTTGCG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 AAGAAGAAGGAGAACGAGAAAGTTGCTAAGAAGTTTAAAGATGAGCCGAGGAAAGTTGCG 741
Query 718 AAGAAGAAGAAGAGTGAGAATCGAAATGACGTTAACGGAGCCAAGAAAGTTCGTTGGTTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 AAGAAGAAGAAGAGTGAGAATCGAAATGACGTTAACGGAGCCAAGAAAGTTCGTTGGTTT 801
Query 778 CTTTCTCCGTCTAAGAGTAA---GTCGTCGGAGAAGACGGCGCTTCTAGGAGAATCAAAG 834
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 802 CTTTCTCCATCTAAGAGTAAGTCGTCGTCGGAGAAGACTGCGCTTCTAGGAGAATCAAAG 861
Query 835 AATATTCGGGCTGATGAGTTTATCGGAAAAGAGAGTGAGTCGCCGGAGAATAAGTCTAAC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 AATATTCGGGCTGATGAGTTTATCGGAAAAGAGAGTGAGTCGCCGGAGAATAAGTCTAAC 921
Query 895 GCGAGTCCGGTTTCGGTTCTTGATCGAGATCTTTATGATTATCTTATCCTTGACGATGAC 954
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 922 GCGAGTCCGGTTTCGGTTCTTGATCGAGATCTTTATGATTATCTAATCCTTGACGATGAT 981
Query 955 TACTACTTCTCAGGAGGAGATTCAGAAAGTGCATCGGAGTTGTCAACAAAGCGAGTAGAG 1014
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 982 TACTACTTCTCAGGAGGAGATTCAGAAAGTGCATCGGAGTTGTCAACAAAGCAAGTAGAG 1041
Query 1015 ACAACAACAACAAAATCCTCATGTTCTTCATCACCAGCAAGAACAAGAACAAGTACCAAG 1074
||| |||||||||| |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1042 ---ACAGCAACAAAATCTTCATGTTCTTCATCACCAGCAAAAACAAAAACAAGTACCAAG 1098
Query 1075 AAAGAAAACAACAATAGCACCAACAATGATTCTGAAGAGACAGAGTTTATCACAAAACTA 1134
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1099 AAAGAAAACAACAATAGCACCAACAATGATTCAGAAGAGACAGAGTTTATCACAAAACTA 1158
Query 1135 ATGAATATGCTCTCAGATCTGTCTGAAGAAGACATGAAGTCTTCCACTTGGGTTTCTACT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 ATGAATATGCTCTCAGATCTGTCTGAAGAAGACATGAAGTCTTCCACTTGGGTTTCTACT 1218
Query 1195 TCGTCAACTAAACCCGTTGACTTTACTCAGGTCGAAGATTTTTGTGTCGAATTTGGTCAA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TCGTCAACTAAACCCGTTGACTTTACTCAGGTCGAAGATTTTTGTGTCGAATTTGGTCAA 1278
Query 1255 GAGATTCTTGACCTTGTTATGGACCAGTTAGTTGATGAACTCTGTATCTAGTTTAAATTC 1314
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1279 GAGATTCTTGACCTTGTTATGGACCAGCTAGTTGATGAACTCTGTATCTAGTTTAAATTC 1338
Query 1315 TAAATTATCAG 1325
|||||||||
Sbjct 1339 CCAATTATCAG 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210507955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5