BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939532
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01360.1 | Symbols: TBL3 | Plant protein of unknown function... 2012 0.0
> AT5G01360.1 | Symbols: TBL3 | Plant protein of unknown function
(DUF828) | chr5:147482-149367 REVERSE LENGTH=1482
Length=1482
Score = 2012 bits (1089), Expect = 0.0
Identities = 1261/1345 (94%), Gaps = 8/1345 (1%)
Strand=Plus/Plus
Query 1 AAATTACC-GCATTTGCCACTATGAGCTTCTTAATTCCTAACAGAGGAGCAGGAGGAACC 59
|||||||| | ||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 32 AAATTACCAG-ATTTGCCACTATGAGCTTCTTGATTCCTAATAGAGGAGTAGGAGGAACC 90
Query 60 AAGATTCCTCTTTCCATCATTGTTCTCGTTCTTTGTGGTTTCATGTTCTTCATTCTCTTT 119
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 91 AAGATTCCTCTCTCCATCATCGTTCTCGTTCTTTGTGGTTTCATGTTCTTCATTCTCTTA 150
Query 120 TACACCGAAAGAATCAGCTTGATGTCTTCTTCTTCCTCTTCGTCTTCATATTTTTTCAAG 179
||||| ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 151 TACACTGAAAGAATCAGCTTGTTGTCTTCTTCTTCCTCTTCGTCTTCATCTTTCTTCAAG 210
Query 180 CTTAAGTCTTGTCCGAGGAAAGACAACAGCTCGAAACCTAAGGAGAAAATTCAAAAGGAG 239
|| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 211 CTAAAGTCTTGTCCGAGGAAAGATGTTAGCTCGAAACCTAAGGAGAAAATTCGAAAGGAA 270
Query 240 AGATCAGAAATTTTAGAAGTGCTTGACGACAGGTTCGAATTCGATCCAGAAGAGTGTAAT 299
|||||||| || || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 271 AGATCAGAGATATTGGAAGTGCTTGACGACAGGTTCGAATTCGATCCCGAAGAGTGTAAC 330
Query 300 GTTGCAGCTGGGAAATGGGTTTATAATAGCTCAATCGAACCACTCTACACCGATAGATCA 359
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 331 GTTGCAGCAGGGAAATGGGTTTACAATAGCTCAATTGAACCACTCTACACCGATAGATCA 390
Query 360 TGTCCGTACATTGACCGTCAATTCTCTTGTATGAAAAACGGGCAGCCAGAAACTGATTAC 419
||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 391 TGTCCATACATCGATCGTCAATTCTCTTGTATGAAAAACGGACAGCCAGAAACTGATTAT 450
Query 420 CTTCGATGGGAGTGGCAGCCTGATGACTGTACAATTCCACGATTTAGTCCGAAGTTAGCT 479
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CTTCGGTGGGAATGGCAGCCTGATGACTGTACAATTCCACGATTTAGTCCGAAGTTAGCA 510
Query 480 ATGAACAAGCTCAGAGGAAAAAGACTGCTATTTGTCGGAGATTCTTTGCAACGAAGCCAA 539
|||||||| ||||||||||||||||| || ||||| |||||||| |||||||||||||||
Sbjct 511 ATGAACAAACTCAGAGGAAAAAGACTACTTTTTGTGGGAGATTCGTTGCAACGAAGCCAA 570
Query 540 TGGGAATCATTCGTGTGTTTGGTGGAATCAATAATACCCGAAGCG-GAAAAATCAATGAA 598
|||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 571 TGGGAATCGTTCGTGTGTTTGGTGGAATCAATAATACCCGAAG-GAGAAAAATCAATGAA 629
Query 599 GCGTAGCCGAAAACACTTTGTCTTTAAAGCAAAGGAATACAATGCGACTATAGAATTCTA 658
|||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 630 GCGTAGCCAAAAATACTTTGTATTTAAAGCAAAGGAATACAATGCGACTATAGAGTTCTA 689
Query 659 TTGGGCACCGTATATCGTCGAGTCAAACACAGATATACCTGTGATATCAGATCCGAAGAA 718
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||
Sbjct 690 TTGGGCACCGTATATCGTCGAATCAAACACAGATATACCTGTGATTTCGGATCCAAAGAA 749
Query 719 AAGGATAGTGAAAGTGGACTCAGTGAAAGATCGAGCTAAGTTTTGGGAAGGAGCGGATAT 778
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 750 ACGGATAGTGAAAGTGGACTCAGTGAAAGATCGAGCTAAGTTTTGGGAAGGAGCTGATAT 809
Query 779 TTTGGTTTTCAACACTTATGTTTGGTGGATGAGTGGTCTCCGAATGAAAGCTCTGTGGGG 838
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 810 TTTGGTTTTCAACACTTATGTTTGGTGGATGAGTGGTCTCCGCATGAAAGCTCTGTGGGG 869
Query 839 TTCGTTT-GGAAATGGAGAGAGTGGTGCGGAGGCGTTAGACACACCAGTGGCTTACAGGC 897
||| ||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 870 TTC-TTTCGGAAATGGAGAGAGTGGTGCAGAGGCACTAGACACACAAGTGGCTTACAGGC 928
Query 898 TAGGGCTCAAGACATGGGCTAATTGGGTTGACTCTACCGTTGACCCTAATAAGACGAGAG 957
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 929 TAGGACTCAAGACATGGGCTAATTGGGTAGACTCCACCGTTGACCCTAATAAGACCAGAG 988
Query 958 TCTTCTTCACCACCATGTCTCCTACTCATACTAGAAGTGCGGATTGGGGAAAGCCAAATG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 989 TCTTCTTCACCACCATGTCTCCTACTCATACTAGAAGTGCGGATTGGGGAAAGCCAAACG 1048
Query 1018 GCACGAAGTGTTTCAACGAGACGAAACCCATAAAAGATAAGAAGTTTTGGGGAACTGGCT 1077
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1049 GCACGAAGTGTTTCAACGAGACGAAACCGATAAAAGATAAGAAGTTTTGGGGAACAGGCT 1108
Query 1078 CTAACAAGCAGATGATGAAAGTCGTGTCAAGCGTCATCAAA-CACATGACCACGCACGTG 1136
|||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||| |||
Sbjct 1109 CTAACAAGCAGATGATGAAAGTAGTGTCAAGCGTGAT-AAAGCACATGACTACGCATGTG 1167
Query 1137 ACTGTCATCAACATCACGCAGCTCTCTGAGTATCGCATAGACGCTCACACATCAGTTTAC 1196
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1168 ACAGTCATCAACATCACGCAGCTCTCTGAGTATCGCATCGACGCTCACACATCAGTTTAC 1227
Query 1197 ACCGAGACAGGTGGCAAGATCTTAACGGCTGAGGAGAGGGCTGATCCTATGCATCACGCT 1256
||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||
Sbjct 1228 ACCGAGACAGGTGGCAAGATCCTAACCGCTGAGCAGAGGGCTGATCCAATGCATCACGCT 1287
Query 1257 GATTGTATACATTGGTGTCTACCTGGATTGCCCGATACATGGAACCGGATCTTATTGGCT 1316
|||||||||||||||||| |||||||| | |||||||||||||| |||||| ||||||||
Sbjct 1288 GATTGTATACATTGGTGTTTACCTGGACTACCCGATACATGGAATCGGATCCTATTGGCT 1347
Query 1317 CATTTGTAAATCAAGCTAGGAGGAA 1341
|||||||||||||||||||||||||
Sbjct 1348 CATTTGTAAATCAAGCTAGGAGGAA 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5