BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939534

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   195    2e-49


> AT5G01350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 
chr5:145636-147200 REVERSE LENGTH=547
Length=547

 Score =  195 bits (105),  Expect = 2e-49
 Identities = 119/125 (95%), Gaps = 3/125 (2%)
 Strand=Plus/Minus

Query  82   CTTCATACAAAG-GGTTAGTCACTCCGGTAGAGTTTGGTTTAAAAGAAGAGAAACAGCAC  140
            ||||||||  || ||||||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct  507  CTTCATAC--AGTGGTTAGTCACTCCGGAAGAGTTGGGTTTAAGAGAAGAGAAACAGCAC  450

Query  141  CAAAAGATCACTGGTTGTTTAATCCACAAGCTTATTACTTTTTAACATTCTTTATACAAA  200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  449  CAAAAGATCACTGGTTGTTTAATCCACAAGCTTATTACTTTTTAACATTCTTTATACAAA  390

Query  201  GATAA  205
            |||||
Sbjct  389  GATAA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9154845882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5